C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257860 PRPH-001 ENSG00000135406 9606 + 12:49293702-49298686 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverOvaryENST00000257860
Transcript ID Adipose Adrenal Breast Colon Heart Liver Ovary
ENST00000257860 0.214±0.00 0.326±0.00 0.274±0.00 2.776±0.00 0.046±0.00 0.044±0.03 1.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009R CIL_00009R_0001 CGP 12:49188736-49298686
CIL_00009Q CIL_00009Q_0001 CGP 12:49293252-49331731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005882 TAS:IEA intermediate filament
GO:0005883 IEA neurofilament
GO:0016020 IDA membrane
GO:0030424 IEA axon
GO:0042622 IEA photoreceptor outer segment membrane
GO:0044299 IEA C-fiber
GO:0045098 IEA type III intermediate filament
GO:0045104 IEA intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024249 Prph-201 protein_coding Mus_musculus 0 1759
ENSMUST00000047104 Prph-202 protein_coding Mus_musculus 0 1138
ENSDART00000121861 prph-201 protein_coding Danio_rerio 0 379
ENSDART00000154314 prph-001 protein_coding Danio_rerio 0 379
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 3e-28 132
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 3e-28 132
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 6e-20 104
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 3e-18 99
ENSMUST00000022638 Nefm-001 protein_coding Mus_musculus 0.000000000000006 88
ENSMUST00000179022 Lmnb2-201 protein_coding Mus_musculus 0.00000000000008 84
ENSMUST00000105332 Lmnb2-002 protein_coding Mus_musculus 0.00000000000008 84
ENSMUST00000057623 Lmnb2-001 protein_coding Mus_musculus 0.00000000000008 84
ENSMUST00000111089 Nefm-002 protein_coding Mus_musculus 0.000000000001 81

Loading