C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004872 Pax3 10090 - 1:78101267-78197134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004994 Pax3-002 78101267-78196838 protein_coding
  ENSMUST00000087086 Pax3-001 78101270-78197134 protein_coding
  ENSMUST00000172555 Pax3-003 78183456-78197113 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004994ENSMUST00000087086ENSMUST00000172555
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004994 0.003±0.00 0.513±0.38 0.101±0.00 N/A N/A 0.055±0.00 0.010±0.01 0.016±0.00 0.031±0.02 0.049±0.03 0.112±0.05 0.172±0.08
ENSMUST00000087086 N/A 1.375±1.07 0.018±0.00 N/A 0.035±0.01 0.038±0.00 0.011±0.01 0.020±0.00 0.053±0.01 N/A 0.078±0.04 0.065±0.02
ENSMUST00000172555 0.002±0.00 N/A 0.025±0.00 0.058±0.04 N/A 0.005±0.00 0.007±0.00 0.014±0.00 0.011±0.00 0.059±0.00 0.023±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XL CIL_0006XL_0002 CGP 1:77367185-78197134
CIL_0008C0 CIL_0008C0_0002 VISTA 1:77814828-78415847
CIL_0008LF CIL_0008LF_0002 VISTA 1:77884098-78485294
CIL_000464 CIL_000464_0002 CGP 1:78101267-78420289

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001755 IMP neural crest cell migration
GO:0001843 IMP neural tube closure
GO:0003682 IDA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0007517 IMP muscle organ development
GO:0008283 IMP cell proliferation
GO:0008284 IMP positive regulation of cell proliferation
GO:0014807 IGI regulation of somitogenesis
GO:0016477 IMP cell migration
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021915 IGI neural tube development
GO:0035914 NAS skeletal muscle cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0048066 IMP developmental pigmentation
GO:0048663 IGI neuron fate commitment
GO:0055007 NAS cardiac muscle cell differentiation
GO:0060594 IMP mammary gland specification
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010192 pax3a paired box gene 3a protein_coding Danio_rerio
ENSDARG00000028348 pax3b paired box gene 3b protein_coding Danio_rerio
ENSG00000135903 PAX3 paired box 3 protein_coding Homo_sapiens

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