C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L35
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136942 RPL35 9606 - 9:124857880-124861981 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348462 RPL35-001 124857884-124861961 protein_coding
  ENST00000373570 RPL35-005 124857880-124861915 protein_coding
  ENST00000487431 RPL35-004 124857883-124861936 retained_intron
  ENST00000493018 RPL35-003 124857883-124861935 nonsense_mediated_decay
  ENST00000495728 RPL35-002 124860979-124861981 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348462
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348462 672.799±0.00 930.722±0.00 22.319±0.00 182.935±89.11 362.450±238.74 552.751±443.75 135.441±104.78 267.201±155.89 293.575±183.85 761.984±697.72 565.870±386.78 1208.662±676.99 1266.519±379.84 560.106±125.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075G CIL_00075G_0001 CGP 9:124777158-124857890
CIL_00075H CIL_00075H_0001 CGP 9:124853417-124861981
CIL_00075E CIL_00075E_0001 CGP 9:124857880-124877733

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 TAS mRNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 TAS nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018334 rpl35 ribosomal protein L35 protein_coding Danio_rerio
ENSMUSG00000062997 Rpl35 ribosomal protein L35 protein_coding Mus_musculus
ENSMUSG00000069439 Gm8444 predicted gene 8444 protein_coding Mus_musculus
ENSMUSG00000078193 Gm2000 predicted gene 2000 protein_coding Mus_musculus
ENSMUSG00000091449 Gm10269 predicted gene 10269 protein_coding Mus_musculus

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