C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348462 RPL35-001 ENSG00000136942 9606 - 9:124857884-124861961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348462
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348462 672.799±0.00 930.722±0.00 22.319±0.00 182.935±89.11 362.450±238.74 552.751±443.75 135.441±104.78 267.201±155.89 293.575±183.85 761.984±697.72 565.870±386.78 1208.662±676.99 1266.519±379.84 560.106±125.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075G CIL_00075G_0001 CGP 9:124777158-124857890
CIL_00075H CIL_00075H_0001 CGP 9:124853417-124861981
CIL_00075E CIL_00075E_0001 CGP 9:124857880-124877733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003729 TAS mRNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 TAS nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102782 Gm2000-001 protein_coding Mus_musculus 0 475
ENSMUST00000080861 Rpl35-001 protein_coding Mus_musculus 0 470
ENSMUST00000152441 Rpl35-003 processed_transcript Mus_musculus 0 457
ENSMUST00000165229 Gm10269-201 protein_coding Mus_musculus 0 455
ENSMUST00000118982 Gm4342-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000092020 Gm8444-201 protein_coding Mus_musculus 0 372
ENSMUST00000117147 Gm12460-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000118070 Rpl35-ps1-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000119868 Gm13717-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 0 302
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 0 302
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000117995 Gm12225-001 processed_pseudogene Mus_musculus 3e-39 165
ENSMUST00000165437 Gm5258-001 processed_pseudogene Mus_musculus 4e-38 161
ENSMUST00000039535 Wdr38-003 nonsense_mediated_decay Mus_musculus 2e-26 122

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