C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373570 RPL35-005 ENSG00000136942 9606 - 9:124857880-124861915 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075G CIL_00075G_0001 CGP 9:124777158-124857890
CIL_00075H CIL_00075H_0001 CGP 9:124853417-124861981
CIL_00075E CIL_00075E_0001 CGP 9:124857880-124877733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102782 Gm2000-001 protein_coding Mus_musculus 0 276
ENSMUST00000080861 Rpl35-001 protein_coding Mus_musculus 0 270
ENSMUST00000152441 Rpl35-003 processed_transcript Mus_musculus 0 265
ENSMUST00000118982 Gm4342-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000165229 Gm10269-201 protein_coding Mus_musculus 0 257
ENSMUST00000117147 Gm12460-001 processed_pseudogene Mus_musculus 0 204
ENSMUST00000092020 Gm8444-201 protein_coding Mus_musculus 8.00001e-41 171
ENSMUST00000118070 Rpl35-ps1-001 processed_pseudogene Mus_musculus 4e-39 165
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 8e-36 154
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 2e-31 139
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 2e-31 139
ENSMUST00000117995 Gm12225-001 processed_pseudogene Mus_musculus 2e-26 122
ENSMUST00000039535 Wdr38-003 nonsense_mediated_decay Mus_musculus 2e-26 122
ENSMUST00000165437 Gm5258-001 processed_pseudogene Mus_musculus 0.00000000000001 84

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