C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487431 RPL35-004 ENSG00000136942 9606 - 9:124857883-124861936 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075G CIL_00075G_0001 CGP 9:124777158-124857890
CIL_00075H CIL_00075H_0001 CGP 9:124853417-124861981
CIL_00075E CIL_00075E_0001 CGP 9:124857880-124877733

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102782 Gm2000-001 protein_coding Mus_musculus 0 470
ENSMUST00000080861 Rpl35-001 protein_coding Mus_musculus 0 464
ENSMUST00000152441 Rpl35-003 processed_transcript Mus_musculus 0 462
ENSMUST00000165229 Gm10269-201 protein_coding Mus_musculus 0 451
ENSMUST00000118982 Gm4342-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000092020 Gm8444-201 protein_coding Mus_musculus 0 372
ENSMUST00000117147 Gm12460-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000118070 Rpl35-ps1-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000119868 Gm13717-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000134694 Itgam-010 protein_coding Mus_musculus 0 292
ENSMUST00000098015 Itgam-001 protein_coding Mus_musculus 0 292
ENSMUST00000120817 Gm7212-001 processed_pseudogene Mus_musculus 0 263
ENSMUST00000117995 Gm12225-001 processed_pseudogene Mus_musculus 8e-38 161
ENSMUST00000165437 Gm5258-001 processed_pseudogene Mus_musculus 1e-36 158
ENSMUST00000039535 Wdr38-003 nonsense_mediated_decay Mus_musculus 4e-26 122

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