C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22, member 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137266 SLC22A23 9606 - 6:3268962-3457022 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380298 SLC22A23-001 3323342-3456559 protein_coding
  ENST00000380302 SLC22A23-009 3271774-3445013 protein_coding
  ENST00000406686 SLC22A23-006 3269458-3456559 protein_coding
  ENST00000433689 SLC22A23-004 3323342-3324165 processed_transcript
  ENST00000436008 SLC22A23-002 3268962-3457022 protein_coding
  ENST00000467144 SLC22A23-012 3286984-3324183 processed_transcript
  ENST00000467177 SLC22A23-010 3283874-3439418 protein_coding
  ENST00000482874 SLC22A23-013 3273356-3284120 retained_intron
  ENST00000485307 SLC22A23-007 3283465-3456043 protein_coding
  ENST00000490273 SLC22A23-005 3272830-3444984 protein_coding
  ENST00000496753 SLC22A23-011 3289766-3377986 processed_transcript
  ENST00000497691 SLC22A23-008 3271774-3444969 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380302ENST00000406686ENST00000436008ENST00000467144ENST00000497691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380302 N/A N/A 0.970±0.00 N/A N/A 3.827±0.00 N/A N/A 1.219±0.00 N/A N/A N/A N/A N/A
ENST00000406686 5.868±0.00 1.150±0.00 0.472±0.00 6.026±2.75 2.163±0.00 1.460±0.00 1.009±0.00 1.613±0.64 1.729±0.00 1.349±0.48 0.639±0.05 3.123±1.66 3.292±1.05 1.681±0.23
ENST00000436008 2.445±0.00 1.458±0.00 N/A N/A 1.323±0.00 2.114±0.75 0.941±0.00 1.825±0.00 1.874±0.00 1.383±0.11 0.576±0.00 3.470±2.05 2.130±0.39 N/A
ENST00000467144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.915±0.00
ENST00000497691 N/A N/A 1.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0001 VISTA 6:2946622-3549686
CIL_000823 CIL_000823_0001 VISTA 6:3049163-3652023
CIL_0003IV CIL_0003IV_0001 CGP 6:3224261-3303373
CIL_00015Z CIL_00015Z_0002 CGP 6:3231403-3457022
CIL_0003IW CIL_0003IW_0001 CGP 6:3268962-3752026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078856 SLC22A23 (1 of 2) solute carrier family 22, member 23 protein_coding Danio_rerio
ENSDARG00000079638 SLC22A23 (2 of 2) solute carrier family 22, member 23 protein_coding Danio_rerio
ENSMUSG00000038267 Slc22a23 solute carrier family 22, member 23 protein_coding Mus_musculus

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