C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 22, member 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038267 Slc22a23 10090 - 13:34179158-34345182 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040336 Slc22a23-001 34179158-34345182 protein_coding
  ENSMUST00000128392 Slc22a23-006 34182867-34193531 retained_intron
  ENSMUST00000143353 Slc22a23-005 34221370-34344203 processed_transcript
  ENSMUST00000145038 Slc22a23-004 34204020-34344595 nonsense_mediated_decay
  ENSMUST00000148390 Slc22a23-002 34179643-34344451 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040336ENSMUST00000128392ENSMUST00000148390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040336 2.011±1.28 1.534±0.64 3.558±1.44 6.105±2.27 1.281±0.30 10.464±4.67 0.574±0.05 5.949±3.61 4.820±1.24 7.498±2.25 0.852±0.19 0.662±0.00 3.016±0.96 0.164±0.04
ENSMUST00000128392 N/A N/A N/A 17.865±0.00 N/A 39.964±0.00 N/A N/A N/A N/A N/A 4.429±1.04 18.610±0.00 2.612±0.51
ENSMUST00000148390 3.389±0.62 2.276±0.33 7.456±1.57 11.031±7.36 4.394±1.22 12.999±5.53 1.987±0.30 15.591±2.64 10.837±1.65 11.208±2.91 1.747±0.38 1.725±0.97 8.869±5.23 0.437±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0002 VISTA 13:33848088-34450616
CIL_000823 CIL_000823_0002 VISTA 13:33947185-34549843
CIL_00015Z CIL_00015Z_0003 CGP 13:34162964-34345182
CIL_0003IW CIL_0003IW_0002 CGP 13:34179158-34652681

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane
GO:0022857 IEA transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078856 SLC22A23 (1 of 2) solute carrier family 22, member 23 protein_coding Danio_rerio
ENSDARG00000079638 SLC22A23 (2 of 2) solute carrier family 22, member 23 protein_coding Danio_rerio
ENSG00000137266 SLC22A23 solute carrier family 22, member 23 protein_coding Homo_sapiens

Loading