C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC11 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140612 SEC11A 9606 - 15:84669538-84716716 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268220 SEC11A-001 84669544-84716716 protein_coding
  ENST00000455959 SEC11A-002 84669560-84716163 protein_coding
  ENST00000558134 SEC11A-008 84669544-84716089 protein_coding
  ENST00000558196 SEC11A-003 84680747-84716067 protein_coding
  ENST00000558217 SEC11A-009 84669545-84716063 protein_coding
  ENST00000558924 SEC11A-006 84669546-84673826 retained_intron
  ENST00000559376 SEC11A-007 84669544-84671747 retained_intron
  ENST00000559729 SEC11A-201 84669538-84716460 protein_coding
  ENST00000560266 SEC11A-004 84669544-84716111 protein_coding
  ENST00000560409 SEC11A-005 84669854-84716127 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268220ENST00000455959ENST00000558134ENST00000558217ENST00000559729ENST00000560266ENST00000560409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 88.749±0.00 N/A N/A
ENST00000455959 N/A N/A N/A 6.831±0.00 4.294±0.00 12.737±0.00 4.509±0.00 13.552±0.00 10.020±5.40 14.342±0.00 5.683±3.46 30.979±1.52 15.236±0.03 12.443±2.40
ENST00000558134 N/A N/A 6.338±0.00 5.730±0.00 10.240±0.00 27.299±0.00 N/A 12.237±6.29 8.430±0.00 34.403±0.00 8.216±0.00 36.538±0.00 25.642±6.91 32.089±0.00
ENST00000558217 19.461±0.00 N/A N/A 4.418±0.00 N/A 5.477±0.00 N/A 11.978±0.00 12.385±0.73 8.300±0.00 N/A 80.705±0.00 54.837±0.00 27.168±0.00
ENST00000559729 45.775±0.00 27.585±0.00 3.035±0.00 N/A 19.143±14.33 29.659±0.00 8.353±0.00 22.237±14.21 9.647±0.00 27.327±0.00 8.762±0.00 24.979±0.00 20.708±0.17 29.155±0.00
ENST00000560266 17.003±0.00 20.488±0.00 N/A 17.126±0.00 26.410±0.00 N/A 13.689±8.45 N/A N/A 5.135±0.00 18.526±14.17 N/A N/A 13.531±0.00
ENST00000560409 75.007±0.00 28.292±0.00 12.850±0.00 N/A 33.013±11.68 25.329±9.74 5.127±0.00 16.303±0.00 14.441±6.13 18.785±9.02 7.385±0.00 73.489±43.28 39.688±37.73 34.922±16.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XQ CIL_0003XQ_0002 CGP 15:84655129-84716716
CIL_0003XP CIL_0003XP_0002 CGP 15:84669538-84806432

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0010467 TAS gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0050796 TAS regulation of insulin secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008936 sec11a SEC11 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000025724 Sec11a SEC11 homolog A (S. cerevisiae) protein_coding Mus_musculus

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