C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455959 SEC11A-002 ENSG00000140612 9606 - 15:84669560-84716163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000455959
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000455959 6.831±0.00 4.294±0.00 12.737±0.00 4.509±0.00 13.552±0.00 10.020±5.40 14.342±0.00 5.683±3.46 30.979±1.52 15.236±0.03 12.443±2.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XQ CIL_0003XQ_0002 CGP 15:84655129-84716716
CIL_0003XP CIL_0003XP_0002 CGP 15:84669538-84806432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0010467 TAS gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0050796 TAS regulation of insulin secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026818 Sec11a-001 protein_coding Mus_musculus 0 1086
ENSMUST00000150049 Sec11a-004 processed_transcript Mus_musculus 0 763
ENSMUST00000130981 Sec11a-005 retained_intron Mus_musculus 0 763
ENSMUST00000119980 Sec11a-006 protein_coding Mus_musculus 0 592
ENSMUST00000120285 Sec11a-010 protein_coding Mus_musculus 0 592
ENSMUST00000147881 Sec11a-008 processed_transcript Mus_musculus 0 499
ENSMUST00000136556 Sec11a-002 retained_intron Mus_musculus 0 496
ENSMUST00000117383 Sec11a-003 protein_coding Mus_musculus 0 448
ENSMUST00000153053 Sec11a-007 retained_intron Mus_musculus 0 403
ENSMUST00000147813 Sec11a-009 processed_transcript Mus_musculus 0 267

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