C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC11 homolog A (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025724 Sec11a 10090 - 7:80904889-80947780 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026818 Sec11a-001 80915377-80947780 protein_coding
  ENSMUST00000117383 Sec11a-003 80915661-80947780 protein_coding
  ENSMUST00000119980 Sec11a-006 80916089-80947780 protein_coding
  ENSMUST00000120285 Sec11a-010 80907716-80947513 protein_coding
  ENSMUST00000130981 Sec11a-005 80915377-80923558 retained_intron
  ENSMUST00000136556 Sec11a-002 80920895-80947742 retained_intron
  ENSMUST00000147813 Sec11a-009 80904889-80947545 processed_transcript
  ENSMUST00000147881 Sec11a-008 80915763-80947511 processed_transcript
  ENSMUST00000150049 Sec11a-004 80915377-80925650 processed_transcript
  ENSMUST00000153053 Sec11a-007 80915566-80916330 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026818ENSMUST00000117383ENSMUST00000119980ENSMUST00000147881ENSMUST00000150049ENSMUST00000153053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026818 12.746±2.20 N/A 49.873±6.16 28.582±1.28 6.544±2.03 5.705±2.20 8.400±1.90 16.555±5.05 24.458±15.81 9.443±2.64 10.196±1.24 5.719±1.61 49.196±39.65 9.826±0.50
ENSMUST00000117383 8.919±2.44 7.742±2.71 N/A N/A 10.661±3.89 8.236±1.66 4.247±0.33 5.448±1.02 10.152±2.22 11.827±2.42 N/A 16.281±6.61 N/A 8.689±2.97
ENSMUST00000119980 N/A 14.709±3.23 N/A 13.958±0.00 6.420±1.39 10.097±3.31 N/A 6.839±0.01 7.649±2.05 N/A N/A 24.168±29.91 125.372±40.23 19.886±0.00
ENSMUST00000147881 N/A N/A N/A 9.363±0.00 10.755±0.00 N/A N/A N/A N/A N/A N/A 63.478±3.90 61.814±9.60 N/A
ENSMUST00000150049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.596±1.34 31.309±5.79 N/A
ENSMUST00000153053 24.465±4.25 18.309±4.20 N/A 28.839±14.23 29.408±4.46 26.758±8.08 18.259±1.51 42.540±5.99 26.976±6.03 31.484±2.79 N/A 59.815±14.11 95.483±0.00 25.750±3.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0002 VISTA 7:80488938-81090184
CIL_0000N2 CIL_0000N2_0002 CGP 7:80890723-80905076
CIL_0003XQ CIL_0003XQ_0003 CGP 7:80902227-80947780
CIL_0003XP CIL_0003XP_0003 CGP 7:80904889-81045164

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008150 ND biological_process
GO:0008236 IEA serine-type peptidase activity
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008936 sec11a SEC11 homolog A (S. cerevisiae) protein_coding Danio_rerio
ENSG00000140612 SEC11A SEC11 homolog A (S. cerevisiae) protein_coding Homo_sapiens

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