C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558134 SEC11A-008 ENSG00000140612 9606 - 15:84669544-84716089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000558134
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000558134 6.338±0.00 5.730±0.00 10.240±0.00 27.299±0.00 12.237±6.29 8.430±0.00 34.403±0.00 8.216±0.00 36.538±0.00 25.642±6.91 32.089±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XQ CIL_0003XQ_0002 CGP 15:84655129-84716716
CIL_0003XP CIL_0003XP_0002 CGP 15:84669538-84806432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0010467 TAS gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0050796 TAS regulation of insulin secretion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136556 Sec11a-002 retained_intron Mus_musculus 0 575
ENSMUST00000119980 Sec11a-006 protein_coding Mus_musculus 0 575
ENSMUST00000026818 Sec11a-001 protein_coding Mus_musculus 0 575
ENSMUST00000120285 Sec11a-010 protein_coding Mus_musculus 0 575
ENSMUST00000147881 Sec11a-008 processed_transcript Mus_musculus 0 573
ENSMUST00000150049 Sec11a-004 processed_transcript Mus_musculus 0 527
ENSMUST00000130981 Sec11a-005 retained_intron Mus_musculus 0 527
ENSMUST00000117383 Sec11a-003 protein_coding Mus_musculus 0 401

Loading