C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003XQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068144-ENSDARG00000008936 CGP 7955 18:26729335-26742090
GeneTranscriptPositionBiotype
ENSDARG00000008936 (sec11a)
SEC11 homolog A (S. cerevisiae) 		ENSDART00000008013 (sec11a-001) 26732450-26742090 protein_coding
ENSDARG00000068144 (nmba)
neuromedin Ba 		ENSDART00000098361 (nmba-001) 26729335-26730228 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003XQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197696-ENSG00000140612 CGP 9606 15:84655129-84716716
GeneTranscriptPositionBiotype
ENSG00000140612 (SEC11A)
SEC11 homolog A (S. cerevisiae) 		ENST00000268220 (SEC11A-001) 84669544-84716716 protein_coding
ENST00000455959 (SEC11A-002) 84669560-84716163 protein_coding
ENST00000558134 (SEC11A-008) 84669544-84716089 protein_coding
ENST00000558196 (SEC11A-003) 84680747-84716067 protein_coding
ENST00000558217 (SEC11A-009) 84669545-84716063 protein_coding
ENST00000558924 (SEC11A-006) 84669546-84673826 retained_intron
ENST00000559376 (SEC11A-007) 84669544-84671747 retained_intron
ENST00000559729 (SEC11A-201) 84669538-84716460 protein_coding
ENST00000560266 (SEC11A-004) 84669544-84716111 protein_coding
ENST00000560409 (SEC11A-005) 84669854-84716127 nonsense_mediated_decay
ENSG00000197696 (NMB)
neuromedin B 		ENST00000360476 (NMB-001) 84655129-84658548 protein_coding
ENST00000394588 (NMB-002) 84655129-84658563 protein_coding
ENSG00000259654 (RP11-245C17.2)
 ENST00000558044 (RP11-245C17.2-001) 84685884-84686946 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003XQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025723-ENSMUSG00000025724 CGP 10090 7:80902227-80947780
GeneTranscriptPositionBiotype
ENSMUSG00000025723 (Nmb)
neuromedin B 		ENSMUST00000026817 (Nmb-001) 80902228-80905076 protein_coding
ENSMUST00000119428 (Nmb-003) 80902234-80905060 protein_coding
ENSMUST00000146619 (Nmb-002) 80902227-80904393 retained_intron
ENSMUST00000149792 (Nmb-004) 80902234-80904374 retained_intron
ENSMUSG00000025724 (Sec11a)
SEC11 homolog A (S. cerevisiae) 		ENSMUST00000026818 (Sec11a-001) 80915377-80947780 protein_coding
ENSMUST00000117383 (Sec11a-003) 80915661-80947780 protein_coding
ENSMUST00000119980 (Sec11a-006) 80916089-80947780 protein_coding
ENSMUST00000120285 (Sec11a-010) 80907716-80947513 protein_coding
ENSMUST00000130981 (Sec11a-005) 80915377-80923558 retained_intron
ENSMUST00000136556 (Sec11a-002) 80920895-80947742 retained_intron
ENSMUST00000147813 (Sec11a-009) 80904889-80947545 processed_transcript
ENSMUST00000147881 (Sec11a-008) 80915763-80947511 processed_transcript
ENSMUST00000150049 (Sec11a-004) 80915377-80925650 processed_transcript
ENSMUST00000153053 (Sec11a-007) 80915566-80916330 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XQ_0001ENSDARG00000008936ENSDART00000008013ENSDARG00000068144ENSDART00000098361CIL_0003XQ_0002ENSG00000140612ENST00000268220ENST00000455959ENST00000558134ENST00000558196ENST00000558217ENST00000558924ENST00000559376ENST00000559729ENST00000560266ENST00000560409ENSG00000197696ENST00000360476ENST00000394588ENSG00000259654ENST00000558044CIL_0003XQ_0003ENSMUSG00000025723ENSMUST00000026817ENSMUST00000119428ENSMUST00000146619ENSMUST00000149792ENSMUSG00000025724ENSMUST00000026818ENSMUST00000117383ENSMUST00000119980ENSMUST00000120285ENSMUST00000130981ENSMUST00000136556ENSMUST00000147813ENSMUST00000147881ENSMUST00000150049ENSMUST00000153053
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XQ_0001ENSDARG00000008936ENSDART00000008013ENSDARG00000068144ENSDART00000098361CIL_0003XQ_0002ENSG00000140612ENST00000268220ENST00000455959ENST00000558134ENST00000558217ENST00000559729ENST00000560266ENST00000560409ENSG00000197696ENST00000360476ENST00000394588ENSG00000259654ENST00000558044CIL_0003XQ_0003ENSMUSG00000025723ENSMUST00000026817ENSMUST00000119428ENSMUSG00000025724ENSMUST00000026818ENSMUST00000117383ENSMUST00000119980ENSMUST00000147881ENSMUST00000150049ENSMUST00000153053
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008936 ENSDART00000008013 N/A N/A N/A 34.358±18.43 N/A N/A 15.639±5.60 39.831±1.26 1.999±0.00 N/A 6.100±0.00 N/A N/A N/A
ENSDARG00000068144 ENSDART00000098361 N/A N/A N/A 1.819±0.43 N/A N/A N/A 0.193±0.00 0.111±0.00 N/A 0.304±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140612 ENST00000268220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 88.749±0.00 N/A N/A
ENST00000455959 N/A N/A N/A 6.831±0.00 4.294±0.00 12.737±0.00 4.509±0.00 13.552±0.00 10.020±5.40 14.342±0.00 5.683±3.46 30.979±1.52 15.236±0.03 12.443±2.40
ENST00000558134 N/A N/A 6.338±0.00 5.730±0.00 10.240±0.00 27.299±0.00 N/A 12.237±6.29 8.430±0.00 34.403±0.00 8.216±0.00 36.538±0.00 25.642±6.91 32.089±0.00
ENST00000558196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558217 19.461±0.00 N/A N/A 4.418±0.00 N/A 5.477±0.00 N/A 11.978±0.00 12.385±0.73 8.300±0.00 N/A 80.705±0.00 54.837±0.00 27.168±0.00
ENST00000558924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559729 45.775±0.00 27.585±0.00 3.035±0.00 N/A 19.143±14.33 29.659±0.00 8.353±0.00 22.237±14.21 9.647±0.00 27.327±0.00 8.762±0.00 24.979±0.00 20.708±0.17 29.155±0.00
ENST00000560266 17.003±0.00 20.488±0.00 N/A 17.126±0.00 26.410±0.00 N/A 13.689±8.45 N/A N/A 5.135±0.00 18.526±14.17 N/A N/A 13.531±0.00
ENST00000560409 75.007±0.00 28.292±0.00 12.850±0.00 N/A 33.013±11.68 25.329±9.74 5.127±0.00 16.303±0.00 14.441±6.13 18.785±9.02 7.385±0.00 73.489±43.28 39.688±37.73 34.922±16.88
ENSG00000197696 ENST00000360476 6.447±0.00 2.293±0.00 0.241±0.00 1.369±0.00 55.349±0.00 0.390±0.11 1.457±1.27 3.870±3.52 0.770±0.00 0.659±0.24 N/A 3.155±2.10 1.258±0.58 2.683±1.89
ENST00000394588 3.648±0.00 N/A N/A 2.188±1.76 17.306±0.00 1.560±0.00 0.325±0.00 N/A N/A 4.761±0.00 1.421±0.00 1.553±0.93 0.680±0.17 1.983±1.24
ENSG00000259654 ENST00000558044 0.067±0.00 0.631±0.00 0.137±0.00 0.300±0.00 0.747±0.48 0.395±0.00 0.204±0.11 0.200±0.00 0.197±0.06 0.223±0.00 N/A 0.968±0.66 0.233±0.00 0.679±0.31
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025723 ENSMUST00000026817 N/A 3.299±0.00 N/A N/A 3.213±0.00 N/A N/A N/A N/A N/A 4.655±0.67 5.674±0.77 N/A 4.860±0.00
ENSMUST00000119428 N/A 2.685±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025724 ENSMUST00000026818 12.746±2.20 N/A 49.873±6.16 28.582±1.28 6.544±2.03 5.705±2.20 8.400±1.90 16.555±5.05 24.458±15.81 9.443±2.64 10.196±1.24 5.719±1.61 49.196±39.65 9.826±0.50
ENSMUST00000117383 8.919±2.44 7.742±2.71 N/A N/A 10.661±3.89 8.236±1.66 4.247±0.33 5.448±1.02 10.152±2.22 11.827±2.42 N/A 16.281±6.61 N/A 8.689±2.97
ENSMUST00000119980 N/A 14.709±3.23 N/A 13.958±0.00 6.420±1.39 10.097±3.31 N/A 6.839±0.01 7.649±2.05 N/A N/A 24.168±29.91 125.372±40.23 19.886±0.00
ENSMUST00000120285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147881 N/A N/A N/A 9.363±0.00 10.755±0.00 N/A N/A N/A N/A N/A N/A 63.478±3.90 61.814±9.60 N/A
ENSMUST00000150049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.596±1.34 31.309±5.79 N/A
ENSMUST00000153053 24.465±4.25 18.309±4.20 N/A 28.839±14.23 29.408±4.46 26.758±8.08 18.259±1.51 42.540±5.99 26.976±6.03 31.484±2.79 N/A 59.815±14.11 95.483±0.00 25.750±3.57

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