C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC11 homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000560409 SEC11A-005 ENSG00000140612 9606 - 15:84669854-84716127 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000560409
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000560409 75.007±0.00 28.292±0.00 12.850±0.00 33.013±11.68 25.329±9.74 5.127±0.00 16.303±0.00 14.441±6.13 18.785±9.02 7.385±0.00 73.489±43.28 39.688±37.73 34.922±16.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XQ CIL_0003XQ_0002 CGP 15:84655129-84716716
CIL_0003XP CIL_0003XP_0002 CGP 15:84669538-84806432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006465 IEA signal peptide processing
GO:0006508 IEA proteolysis
GO:0008233 IEA peptidase activity
GO:0008236 IEA serine-type peptidase activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136556 Sec11a-002 retained_intron Mus_musculus 0 577
ENSMUST00000119980 Sec11a-006 protein_coding Mus_musculus 0 577
ENSMUST00000026818 Sec11a-001 protein_coding Mus_musculus 0 577
ENSMUST00000120285 Sec11a-010 protein_coding Mus_musculus 0 577
ENSMUST00000147881 Sec11a-008 processed_transcript Mus_musculus 0 573
ENSMUST00000117383 Sec11a-003 protein_coding Mus_musculus 0 401
ENSMUST00000153053 Sec11a-007 retained_intron Mus_musculus 0 255
ENSMUST00000150049 Sec11a-004 processed_transcript Mus_musculus 0 255
ENSMUST00000130981 Sec11a-005 retained_intron Mus_musculus 0 255
ENSMUST00000147813 Sec11a-009 processed_transcript Mus_musculus 5e-20 102

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