C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141429 GALNT1 9606 + 18:35581117-35711834 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269195 GALNT1-001 35654560-35711834 protein_coding
  ENST00000586725 GALNT1-005 35581117-35654593 processed_transcript
  ENST00000589189 GALNT1-004 35627429-35710292 nonsense_mediated_decay
  ENST00000590654 GALNT1-003 35654656-35709780 nonsense_mediated_decay
  ENST00000591081 GALNT1-002 35654572-35664517 protein_coding
  ENST00000591924 GALNT1-006 35581740-35663804 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269195ENST00000589189ENST00000590654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269195 1.989±0.00 14.782±0.00 N/A 4.593±0.41 10.424±4.03 10.992±0.38 2.136±0.00 5.756±0.18 7.581±0.64 8.999±0.33 3.238±0.78 8.005±1.96 11.268±4.49 7.908±3.33
ENST00000589189 N/A N/A 2.278±0.00 N/A 4.690±0.00 4.255±0.00 0.750±0.00 N/A 4.320±0.00 N/A 3.175±0.00 4.864±0.00 N/A N/A
ENST00000590654 5.121±0.00 N/A 0.817±0.00 2.445±0.00 3.959±1.81 3.969±0.00 4.306±1.36 N/A N/A N/A 1.555±0.00 4.268±1.16 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0002 CGP 18:35452230-35711834
CIL_00002F CIL_00002F_0001 CGP 18:35581117-35979286

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005576 IEA extracellular region
GO:0005794 IDA Golgi apparatus
GO:0006493 ISS protein O-linked glycosylation
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018242 IDA protein O-linked glycosylation via serine
GO:0018243 IDA protein O-linked glycosylation via threonine
GO:0030145 IDA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061335 galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000000420 Galnt1 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 protein_coding Mus_musculus

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