C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type III, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153253 SCN3A 9606 - 2:165087522-165204067 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283254 SCN3A-001 165087530-165204043 protein_coding
  ENST00000360093 SCN3A-201 165087522-165204067 protein_coding
  ENST00000409101 SCN3A-002 165089718-165203886 protein_coding
  ENST00000440431 SCN3A-004 165097252-165186554 protein_coding
  ENST00000453007 SCN3A-003 165164393-165204050 protein_coding
  ENST00000465043 SCN3A-007 165092256-165093828 processed_transcript
  ENST00000471697 SCN3A-006 165095511-165097614 retained_intron
  ENST00000484898 SCN3A-008 165122800-165127792 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283254ENST00000360093ENST00000409101ENST00000440431ENST00000453007ENST00000465043ENST00000471697ENST00000484898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283254 N/A 0.254±0.00 1.005±0.00 2.113±0.60 N/A N/A 0.151±0.00 N/A 0.258±0.25 N/A N/A 0.032±0.02 0.014±0.01 N/A
ENST00000360093 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.493±0.00 N/A N/A
ENST00000409101 N/A N/A N/A 0.623±0.00 0.033±0.00 0.255±0.00 N/A N/A N/A N/A N/A 0.037±0.00 N/A 0.118±0.02
ENST00000440431 0.088±0.00 N/A N/A N/A N/A N/A 0.142±0.00 0.025±0.00 N/A 0.074±0.00 0.361±0.00 0.030±0.00 N/A N/A
ENST00000453007 N/A N/A N/A 2.623±0.00 0.197±0.00 0.466±0.00 N/A N/A N/A N/A 0.706±0.00 0.127±0.00 0.010±0.00 N/A
ENST00000465043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.582±0.00
ENST00000471697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.02 1.315±0.00
ENST00000484898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CP CIL_0006CP_0001 CGP 2:164896186-165204067
CIL_0006CO CIL_0006CO_0001 CGP 2:165087522-165392308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA:NAS voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 NAS:IEA sodium ion transport
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010783 scn1a sodium channel, voltage-gated, type I, alpha protein_coding Danio_rerio
ENSDARG00000062744 scn1lab sodium channel, voltage-gated, type I like, alpha b protein_coding Danio_rerio
ENSMUSG00000057182 Scn3a sodium channel, voltage-gated, type III, alpha protein_coding Mus_musculus

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