C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type III, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409101 SCN3A-002 ENSG00000153253 9606 - 2:165089718-165203886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryTestisENST00000409101
Transcript ID Brain Breast Colon Ovary Testis
ENST00000409101 0.623±0.00 0.033±0.00 0.255±0.00 0.037±0.00 0.118±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CP CIL_0006CP_0001 CGP 2:164896186-165204067
CIL_0006CO CIL_0006CO_0001 CGP 2:165087522-165392308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA:NAS voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 NAS:IEA sodium ion transport
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 7413
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 7408
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 3387
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 3387
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 3081
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 3081
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 3081
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 3081
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 1864
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 1864
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 1864
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 1864
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 1864
ENSDART00000090994 scn1lab-201 protein_coding Danio_rerio 0 1243
ENSDART00000151247 scn1lab-001 protein_coding Danio_rerio 0 1243
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 1160
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 1160
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 1160
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 1044
ENSMUST00000155838 Scn3a-003 processed_transcript Mus_musculus 0 1037
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 0 924
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 915
ENSDART00000083256 scn12aa-201 protein_coding Danio_rerio 0 647
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 595
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 595
ENSMUST00000126837 Scn3a-002 protein_coding Mus_musculus 0 547
ENSMUST00000138910 Scn1a-006 protein_coding Mus_musculus 0 510
ENSDART00000128198 SCN3A-201 protein_coding Danio_rerio 0 303
ENSMUST00000129508 Scn1a-002 processed_transcript Mus_musculus 0 272
ENSDART00000022382 SCN3A-202 protein_coding Danio_rerio 0 215
ENSMUST00000141603 Scn9a-003 retained_intron Mus_musculus 7e-22 111

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