C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sodium channel, voltage-gated, type III, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465043 SCN3A-007 ENSG00000153253 9606 - 2:165092256-165093828 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000465043
Transcript ID Testis
ENST00000465043 1.582±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CP CIL_0006CP_0001 CGP 2:164896186-165204067
CIL_0006CO CIL_0006CO_0001 CGP 2:165087522-165392308

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 370
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 370
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 265
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 265
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 265
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 265
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 254
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 254
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 2e-36 156
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 2e-36 156
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 2e-36 156
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 2e-36 156
ENSMUST00000021056 Scn4a-001 protein_coding Mus_musculus 3e-21 106

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