C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type I, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000010783 scn1a 7955 + 9:50902616-50972365 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000011718 scn1a-201 50902616-50972365 protein_coding
  ENSDART00000090979 scn1a-202 50902616-50972365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000011718ENSDART00000090979
Transcript ID Brain Heart Kidney Muscle
ENSDART00000011718 0.028±0.02 0.030±0.00 0.099±0.00 0.006±0.00
ENSDART00000090979 0.028±0.02 0.030±0.00 0.098±0.00 0.006±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005272 IEA sodium channel activity
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000136531 SCN2A sodium channel, voltage-gated, type II, alpha subunit protein_coding Homo_sapiens
ENSG00000136546 SCN7A sodium channel, voltage-gated, type VII, alpha subunit protein_coding Homo_sapiens
ENSG00000144285 SCN1A sodium channel, voltage-gated, type I, alpha subunit protein_coding Homo_sapiens
ENSG00000153253 SCN3A sodium channel, voltage-gated, type III, alpha subunit protein_coding Homo_sapiens
ENSG00000169432 SCN9A sodium channel, voltage-gated, type IX, alpha subunit protein_coding Homo_sapiens
ENSMUSG00000034810 Scn7a sodium channel, voltage-gated, type VII, alpha protein_coding Mus_musculus
ENSMUSG00000057182 Scn3a sodium channel, voltage-gated, type III, alpha protein_coding Mus_musculus
ENSMUSG00000064329 Scn1a sodium channel, voltage-gated, type I, alpha protein_coding Mus_musculus
ENSMUSG00000075316 Scn9a sodium channel, voltage-gated, type IX, alpha protein_coding Mus_musculus
ENSMUSG00000075318 Scn2a1 sodium channel, voltage-gated, type II, alpha 1 protein_coding Mus_musculus

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