C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000287038 RPL30-001 ENSG00000156482 9606 - 8:98041721-98045590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000287038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000287038 382.369±0.00 575.073±0.00 30.075±0.00 137.933±24.67 248.733±104.33 365.705±239.28 85.399±26.41 141.794±24.80 164.559±2.92 257.553±137.91 256.385±134.87 811.080±830.11 652.502±418.06 250.568±212.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KV CIL_0001KV_0001 CGP 8:97775057-98036716
CIL_0001KP CIL_0001KP_0001 CGP 8:98024851-98093610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079735 Rpl30-001 protein_coding Mus_musculus 0 667
ENSMUST00000009039 Rpl30-002 protein_coding Mus_musculus 0 580
ENSMUST00000118307 Gm12191-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000122265 Rpl30-ps9-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000119767 Rpl30-ps1-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000076166 Rpl30-ps8-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117119 Rpl30-ps10-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000118664 Gm7429-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000142643 Rpl30-005 processed_transcript Mus_musculus 0 499
ENSMUST00000096279 Gm10343-201 processed_pseudogene Mus_musculus 0 492
ENSMUST00000071536 Gm6570-201 processed_pseudogene Mus_musculus 0 488
ENSMUST00000117928 Rpl30-ps3-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000119573 Gm9703-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000119630 Rpl30-ps11-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000140527 Rpl30-004 processed_transcript Mus_musculus 0 388
ENSMUST00000117104 Rpl30-ps5-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000160070 Rpl30-ps2-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000122391 Gm14530-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000135417 Rpl30-003 retained_intron Mus_musculus 0 302
ENSDART00000052082 rpl30-001 protein_coding Danio_rerio 0 285
ENSMUST00000136653 Rpl30-006 retained_intron Mus_musculus 0 252
ENSMUST00000117313 Gm13714-001 processed_pseudogene Mus_musculus 0 189

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