C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SON DNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159140 SON 9606 + 21:33542618-33577481 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300278 SON-003 33543064-33560667 protein_coding
  ENST00000356577 SON-001 33542618-33577481 protein_coding
  ENST00000381679 SON-006 33543065-33559056 protein_coding
  ENST00000381692 SON-002 33543052-33577481 protein_coding
  ENST00000421541 SON-008 33555049-33567467 protein_coding
  ENST00000429093 SON-023 33567160-33570198 nonsense_mediated_decay
  ENST00000436227 SON-007 33552248-33577481 protein_coding
  ENST00000455528 SON-004 33543064-33577481 nonsense_mediated_decay
  ENST00000457208 SON-013 33567185-33576513 nonsense_mediated_decay
  ENST00000465834 SON-014 33572527-33576881 retained_intron
  ENST00000467616 SON-019 33569776-33576484 processed_transcript
  ENST00000470533 SON-022 33571869-33576764 processed_transcript
  ENST00000473102 SON-018 33571735-33576469 processed_transcript
  ENST00000474355 SON-012 33567179-33569283 retained_intron
  ENST00000475072 SON-010 33543052-33546752 retained_intron
  ENST00000477419 SON-015 33573025-33576516 retained_intron
  ENST00000478183 SON-009 33572213-33577481 retained_intron
  ENST00000484294 SON-017 33571735-33576447 processed_transcript
  ENST00000491794 SON-016 33573214-33576982 retained_intron
  ENST00000492229 SON-011 33543070-33547039 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300278ENST00000356577ENST00000381679ENST00000381692ENST00000436227ENST00000455528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300278 N/A 9.608±0.00 4.585±0.00 N/A N/A 6.223±0.00 N/A 6.771±0.00 6.432±0.00 4.675±0.00 N/A N/A 18.828±0.00
ENST00000356577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.792±2.64 N/A N/A
ENST00000381679 15.932±0.00 14.515±0.00 3.790±0.00 8.263±4.41 12.331±0.00 8.185±1.22 5.941±0.00 5.852±0.63 7.959±0.65 6.417±3.11 12.199±3.30 13.942±6.66 15.921±0.72
ENST00000381692 N/A 26.314±0.00 N/A 25.762±0.00 28.591±0.00 23.179±0.00 N/A N/A 16.209±0.00 N/A 27.608±3.47 N/A 43.415±0.00
ENST00000436227 N/A N/A 6.622±0.00 N/A 17.924±0.00 10.568±0.00 15.925±9.64 6.627±0.62 13.477±3.30 8.699±3.47 19.897±3.89 18.796±10.79 30.590±0.00
ENST00000455528 11.084±0.00 N/A N/A 3.105±0.00 N/A 8.595±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0001 CGP 21:33485530-33543491
CIL_000466 CIL_000466_0001 CGP 21:33503931-33577481
CIL_00037O CIL_00037O_0001 CGP 21:33542618-33588708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0000910 IMP cytokinesis
GO:0003676 TAS nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006397 IDA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043066 IDA negative regulation of apoptotic process
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0050733 IEA RS domain binding
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079732 SON SON DNA binding protein protein_coding Danio_rerio
ENSMUSG00000022961 Son Son DNA binding protein protein_coding Mus_musculus

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