C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Son DNA binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022961 Son 10090 + 16:91647506-91679221 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114036 Son-002 91647880-91664033 protein_coding
  ENSMUST00000114037 Son-013 91647879-91679195 protein_coding
  ENSMUST00000117633 Son-001 91647506-91679207 protein_coding
  ENSMUST00000119368 Son-003 91647879-91665708 protein_coding
  ENSMUST00000122302 Son-012 91647885-91679221 protein_coding
  ENSMUST00000129167 Son-008 91671349-91672710 processed_transcript
  ENSMUST00000133589 Son-009 91664220-91672141 processed_transcript
  ENSMUST00000140312 Son-005 91647879-91679195 nonsense_mediated_decay
  ENSMUST00000145235 Son-007 91673671-91678120 processed_transcript
  ENSMUST00000146079 Son-010 91674107-91678501 processed_transcript
  ENSMUST00000147461 Son-006 91673441-91677612 processed_transcript
  ENSMUST00000147891 Son-004 91659943-91679192 nonsense_mediated_decay
  ENSMUST00000151503 Son-011 91674932-91677434 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114036ENSMUST00000114037ENSMUST00000117633ENSMUST00000119368ENSMUST00000122302ENSMUST00000140312ENSMUST00000147461ENSMUST00000147891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114036 11.739±3.96 66.721±8.88 7.606±0.00 13.490±0.03 23.601±4.51 12.744±2.30 N/A 6.985±0.49 9.721±4.18 17.809±2.92 N/A 49.280±17.98 11.238±2.23 10.650±0.68
ENSMUST00000114037 27.770±9.69 39.729±4.25 N/A 17.996±2.37 51.357±11.46 28.383±7.09 18.017±1.44 14.149±2.25 10.395±2.50 40.344±5.25 12.874±1.27 51.652±15.58 20.445±10.11 18.518±4.43
ENSMUST00000117633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.739±0.00 19.190±0.00
ENSMUST00000119368 7.556±0.00 16.888±0.00 N/A 31.134±0.00 22.722±11.91 13.206±2.32 N/A N/A 7.045±2.12 N/A N/A 36.861±15.36 17.597±8.96 N/A
ENSMUST00000122302 N/A N/A 56.609±6.17 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140312 18.828±3.87 N/A N/A 16.345±1.27 25.446±8.94 12.300±2.33 12.775±0.93 10.497±1.97 7.508±3.06 33.340±3.28 N/A 22.670±4.29 8.448±0.00 18.205±1.41
ENSMUST00000147461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 251.157±0.00
ENSMUST00000147891 N/A N/A 20.385±2.77 25.519±6.54 N/A N/A N/A N/A 11.472±1.52 N/A 14.208±0.61 40.295±2.61 13.449±2.29 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000466 CIL_000466_0002 CGP 16:91621186-91679221
CIL_00037O CIL_00037O_0002 CGP 16:91647506-91688765

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0000910 ISS cytokinesis
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 ISS mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0043066 IEA negative regulation of apoptotic process
GO:0043484 ISS regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0050733 IPI RS domain binding
GO:0051726 ISS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079732 SON SON DNA binding protein protein_coding Danio_rerio
ENSG00000159140 SON SON DNA binding protein protein_coding Homo_sapiens

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