C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SON DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000300278 SON-003 ENSG00000159140 9606 + 21:33543064-33560667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonLiverLungMuscleTestisENST00000300278
Transcript ID Adrenal Bladder Colon Liver Lung Muscle Testis
ENST00000300278 9.608±0.00 4.585±0.00 6.223±0.00 6.771±0.00 6.432±0.00 4.675±0.00 18.828±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0001 CGP 21:33485530-33543491
CIL_000466 CIL_000466_0001 CGP 21:33503931-33577481
CIL_00037O CIL_00037O_0001 CGP 21:33542618-33588708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0000910 IMP cytokinesis
GO:0003676 TAS nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006397 IDA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043066 IDA negative regulation of apoptotic process
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114037 Son-013 protein_coding Mus_musculus 0 5299
ENSMUST00000140312 Son-005 nonsense_mediated_decay Mus_musculus 0 5299
ENSMUST00000119368 Son-003 protein_coding Mus_musculus 0 5299
ENSMUST00000117633 Son-001 protein_coding Mus_musculus 0 5299
ENSMUST00000114036 Son-002 protein_coding Mus_musculus 0 5297
ENSMUST00000147891 Son-004 nonsense_mediated_decay Mus_musculus 0 1421
ENSMUST00000122302 Son-012 protein_coding Mus_musculus 0 787
ENSMUST00000133589 Son-009 processed_transcript Mus_musculus 0 481

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