C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SON DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356577 SON-001 ENSG00000159140 9606 + 21:33542618-33577481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000356577
Transcript ID Ovary
ENST00000356577 8.792±2.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EH CIL_0007EH_0001 CGP 21:33485530-33543491
CIL_000466 CIL_000466_0001 CGP 21:33503931-33577481
CIL_00037O CIL_00037O_0001 CGP 21:33542618-33588708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0000910 IMP cytokinesis
GO:0003676 TAS:IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006397 IDA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0043066 IDA negative regulation of apoptotic process
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0050733 IEA RS domain binding
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117633 Son-001 protein_coding Mus_musculus 0 5563
ENSMUST00000114037 Son-013 protein_coding Mus_musculus 0 5299
ENSMUST00000140312 Son-005 nonsense_mediated_decay Mus_musculus 0 5299
ENSMUST00000119368 Son-003 protein_coding Mus_musculus 0 5299
ENSMUST00000114036 Son-002 protein_coding Mus_musculus 0 5297
ENSMUST00000122302 Son-012 protein_coding Mus_musculus 0 3123
ENSMUST00000147891 Son-004 nonsense_mediated_decay Mus_musculus 0 2052
ENSMUST00000133589 Son-009 processed_transcript Mus_musculus 0 763
ENSMUST00000146079 Son-010 processed_transcript Mus_musculus 0 582
ENSMUST00000145235 Son-007 processed_transcript Mus_musculus 0 549
ENSMUST00000147461 Son-006 processed_transcript Mus_musculus 0 383
ENSMUST00000151503 Son-011 retained_intron Mus_musculus 0 294
ENSMUST00000133942 Donson-007 protein_coding Mus_musculus 1e-20 108

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