C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163682 RPL9 9606 - 4:39454124-39458948 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295955 RPL9-001 39454124-39458948 protein_coding
  ENST00000437992 RPL9-010 39456328-39458915 retained_intron
  ENST00000449470 RPL9-002 39454137-39458888 protein_coding
  ENST00000503040 RPL9-011 39454562-39458915 protein_coding
  ENST00000503277 RPL9-008 39454132-39458441 retained_intron
  ENST00000504470 RPL9-009 39454624-39458922 protein_coding
  ENST00000506581 RPL9-012 39454139-39457682 protein_coding
  ENST00000508595 RPL9-007 39454137-39458925 protein_coding
  ENST00000511075 RPL9-006 39455811-39458931 retained_intron
  ENST00000511643 RPL9-013 39454138-39455276 retained_intron
  ENST00000514842 RPL9-005 39454171-39458901 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295955ENST00000503040ENST00000504470ENST00000506581ENST00000508595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295955 N/A N/A 21.236±0.00 55.945±0.00 92.987±0.00 85.149±0.00 27.149±0.26 60.311±0.00 99.005±0.00 96.962±13.63 67.519±0.00 516.429±670.84 681.671±302.40 104.335±0.00
ENST00000503040 54.381±0.00 106.298±0.00 N/A 62.416±0.00 71.672±0.00 158.389±0.00 69.857±0.00 109.919±0.00 82.694±0.00 246.177±0.00 41.486±0.00 625.798±0.00 N/A 112.071±0.00
ENST00000504470 201.117±0.00 451.963±0.00 N/A 150.643±0.00 224.302±0.00 425.049±0.00 47.446±0.00 179.652±0.00 103.552±0.00 478.954±0.00 36.110±0.00 N/A N/A 258.204±0.00
ENST00000506581 126.361±0.00 216.622±0.00 46.286±0.00 77.342±7.32 99.469±52.97 157.090±55.22 19.892±0.00 110.624±17.46 65.852±0.00 84.124±0.00 85.843±0.00 607.423±522.68 N/A 129.193±0.00
ENST00000508595 N/A N/A N/A N/A 26.100±0.00 N/A 18.364±0.00 N/A 44.434±8.79 133.133±0.00 N/A 437.246±17.95 379.090±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA:TAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037350 rpl9 ribosomal protein L9 protein_coding Danio_rerio
ENSMUSG00000081906 Rpl9-ps1 ribosomal protein L9, pseudogene 1 protein_coding Mus_musculus

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