C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511643 RPL9-013 ENSG00000163682 9606 - 4:39454138-39455276 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 254
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 250
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 250
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 250
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 250
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 244
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 233
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 233
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 191
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 4e-30 135
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 4e-30 135
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 4e-30 135
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 4e-30 135
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000001 68

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