C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508595 RPL9-007 ENSG00000163682 9606 - 4:39454137-39458925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverLungOvaryPlacentaENST00000508595
Transcript ID Breast Heart Liver Lung Ovary Placenta
ENST00000508595 26.100±0.00 18.364±0.00 44.434±8.79 133.133±0.00 437.246±17.95 379.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0019843 IEA rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 680
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 680
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 675
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 675
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 664
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 621
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 621
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 551
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000061905 Gm20445-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000118836 Gm12741-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 442
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 252
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 252
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 252
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 228
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 0 195
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 9.00054e-42 174
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 4e-30 135

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