C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506581 RPL9-012 ENSG00000163682 9606 - 4:39454139-39457682 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000506581
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000506581 126.361±0.00 216.622±0.00 46.286±0.00 77.342±7.32 99.469±52.97 157.090±55.22 19.892±0.00 110.624±17.46 65.852±0.00 84.124±0.00 85.843±0.00 607.423±522.68 129.193±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0019843 IEA rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 248
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 248
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 248
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 248
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 248
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 243
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 231
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 231
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 189
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 2e-30 135
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 2e-30 135
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 2e-30 135
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 2e-30 135
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 4e-28 128
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 4e-28 128
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 4e-23 111
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 5e-22 108
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 8e-20 100
ENSMUST00000118836 Gm12741-001 processed_pseudogene Mus_musculus 1e-18 97
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 4e-18 95
ENSMUST00000061905 Gm20445-001 processed_pseudogene Mus_musculus 0.000000000000002 86
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0.000000000000002 86
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0.000000000001 77
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0.0000001 60

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