C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295955 RPL9-001 ENSG00000163682 9606 - 4:39454124-39458948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295955
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295955 21.236±0.00 55.945±0.00 92.987±0.00 85.149±0.00 27.149±0.26 60.311±0.00 99.005±0.00 96.962±13.63 67.519±0.00 516.429±670.84 681.671±302.40 104.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA:TAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 800
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 761
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 752
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 741
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 730
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 682
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 682
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 632
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 588
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000061905 Gm20445-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 512
ENSMUST00000118836 Gm12741-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 318
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 318
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 294
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 252
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 0 195
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 9.99995e-41 171
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 5e-30 135

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