C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503040 RPL9-011 ENSG00000163682 9606 - 4:39454562-39458915 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000503040
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000503040 54.381±0.00 106.298±0.00 62.416±0.00 71.672±0.00 158.389±0.00 69.857±0.00 109.919±0.00 82.694±0.00 246.177±0.00 41.486±0.00 625.798±0.00 112.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0019843 IEA rRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057885 Rpl9-001 protein_coding Mus_musculus 0 669
ENSMUST00000078034 Rpl9-ps6-201 protein_coding Mus_musculus 0 664
ENSMUST00000120094 Rpl9-007 protein_coding Mus_musculus 0 654
ENSMUST00000140507 Rpl9-ps7-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000075549 Rpl9-ps4-201 processed_pseudogene Mus_musculus 0 643
ENSMUST00000080545 Gm5451-201 processed_pseudogene Mus_musculus 0 632
ENSMUST00000182502 Rpl9-ps1-002 protein_coding Mus_musculus 0 580
ENSMUST00000117199 Rpl9-ps1-001 translated_processed_pseudogene Mus_musculus 0 580
ENSMUST00000119147 Rpl9-ps3-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121601 Gm12110-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000077111 RP23-4E15.2-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000118543 Rpl9-006 protein_coding Mus_musculus 0 551
ENSMUST00000120821 Rpl9-ps2-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000120090 Gm14231-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000120661 Gm9159-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000147660 Rpl9-004 retained_intron Mus_musculus 0 507
ENSMUST00000119091 Gm8087-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000061905 Gm20445-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000117749 Gm11462-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000174221 Rpl9-ps5-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000173020 Gm5227-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000118836 Gm12741-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000117594 Gm12795-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000117730 Gm7206-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000120283 Gm14927-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000122349 Gm12738-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000190216 RP23-347F2.3-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000121372 Gm14732-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000150815 Rpl9-005 retained_intron Mus_musculus 0 318
ENSMUST00000128074 Rpl9-002 retained_intron Mus_musculus 0 318
ENSMUST00000127874 Rpl9-003 protein_coding Mus_musculus 0 294
ENSMUST00000117292 Gm15516-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000147966 Rpl9-009 retained_intron Mus_musculus 0 215
ENSMUST00000140879 Rpl9-010 retained_intron Mus_musculus 0 189
ENSMUST00000129885 Gm14562-001 processed_pseudogene Mus_musculus 8.99998e-41 171
ENSMUST00000151917 Rpl9-008 retained_intron Mus_musculus 3e-25 119

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