C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518836 EBF1-010 ENSG00000164330 9606 - 5:158695920-159099757 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000518836
Transcript ID Adrenal Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000518836 1.811±0.00 0.183±0.00 7.924±6.48 1.209±0.00 0.743±0.00 1.160±0.00 0.598±0.00 0.784±0.60 1.638±0.00 4.925±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N2 CIL_0007N2_0001 UCNEbase 5:157771686-159082579
CIL_00016F CIL_00016F_0002 CGP 5:157785743-159099761
CIL_00080A CIL_00080A_0001 VISTA 5:158290760-158892059
CIL_0008GW CIL_0008GW_0001 VISTA 5:158416416-159017717
CIL_0008FV CIL_0008FV_0001 VISTA 5:158500688-159102492
CIL_0007UN CIL_0007UN_0001 VISTA 5:158613954-159215603

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081265 Ebf1-001 protein_coding Mus_musculus 0 3535
ENSMUST00000101326 Ebf1-002 protein_coding Mus_musculus 0 3520
ENSMUST00000109268 Ebf1-003 protein_coding Mus_musculus 0 2880
ENSMUST00000149997 Ebf1-005 processed_transcript Mus_musculus 0 891
ENSMUST00000135993 Ebf1-006 processed_transcript Mus_musculus 0 566
ENSMUST00000138452 Ebf1-007 processed_transcript Mus_musculus 0 307

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