C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008GW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs813 VISTA 9606 5:158416416-159017717
GeneTranscriptPositionBiotype
ENSG00000164330 (EBF1)
early B-cell factor 1 		ENST00000313708 (EBF1-001) 158695920-159099761 protein_coding
ENST00000380654 (EBF1-002) 158698664-159099693 protein_coding
ENST00000517373 (EBF1-006) 158698689-159099761 protein_coding
ENST00000518323 (EBF1-007) 158698641-158708009 processed_transcript
ENST00000518836 (EBF1-010) 158695920-159099757 processed_transcript
ENST00000519739 (EBF1-009) 158695920-159096370 retained_intron
ENST00000519890 (EBF1-005) 158695920-159073794 retained_intron
ENST00000522192 (EBF1-003) 158698885-159096606 retained_intron
ENST00000523315 (EBF1-004) 159084666-159097623 processed_transcript
ENST00000523464 (EBF1-008) 158731044-159019129 processed_transcript
ENST00000622875 (EBF1-201) 158695916-158840123 protein_coding
ENSG00000253456 (CTD-2363C16.2)
 ENST00000518425 (CTD-2363C16.2-001) 158985806-158987199 antisense
ENSG00000253811 (CTD-2363C16.1)
 ENST00000522582 (CTD-2363C16.1-001) 158983006-158984789 antisense
ENSG00000254135 (RP11-32D16.1)
 ENST00000519609 (RP11-32D16.1-001) 158485300-158534438 lincRNA
ENST00000522704 (RP11-32D16.1-002) 158485190-158503392 lincRNA
ENSG00000254350 (RP11-542A14.1)
 ENST00000517595 (RP11-542A14.1-001) 158424585-158452758 lincRNA
ENSG00000272085 (RP11-542A14.2)
 ENST00000607514 (RP11-542A14.2-001) 158464465-158464678 lincRNA
CIL_0008GW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs813 VISTA 10090 11:44687161-45288462
GeneTranscriptPositionBiotype
ENSMUSG00000057098 (Ebf1)
early B cell factor 1 		ENSMUST00000081265 (Ebf1-001) 44617317-45008091 protein_coding
ENSMUST00000101326 (Ebf1-002) 44617317-45005529 protein_coding
ENSMUST00000109268 (Ebf1-003) 44617317-45004995 protein_coding
ENSMUST00000135993 (Ebf1-006) 44618179-44643469 processed_transcript
ENSMUST00000138452 (Ebf1-007) 44621761-44643459 processed_transcript
ENSMUST00000140822 (Ebf1-004) 44912138-44972914 processed_transcript
ENSMUST00000149997 (Ebf1-005) 44618116-44646820 processed_transcript
ENSMUSG00000080981 (Gm12161)
predicted gene 12161 		ENSMUST00000121454 (Gm12161-001) 45280594-45280954 processed_pseudogene
ENSMUSG00000084773 (Gm12159)
predicted gene 12159 		ENSMUST00000143869 (Gm12159-001) 45102866-45116928 lincRNA
ENSMUSG00000087089 (Gm12160)
predicted gene 12160 		ENSMUST00000146372 (Gm12160-001) 45160943-45213656 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008GW_0001ENSG00000164330ENST00000313708ENST00000380654ENST00000517373ENST00000518323ENST00000518836ENST00000519739ENST00000519890ENST00000522192ENST00000523315ENST00000523464ENST00000622875ENSG00000253456ENST00000518425ENSG00000253811ENST00000522582ENSG00000254135ENST00000519609ENST00000522704ENSG00000254350ENST00000517595ENSG00000272085ENST00000607514CIL_0008GW_0002ENSMUSG00000057098ENSMUST00000081265ENSMUST00000101326ENSMUST00000109268ENSMUST00000135993ENSMUST00000138452ENSMUST00000140822ENSMUST00000149997ENSMUSG00000080981ENSMUST00000121454ENSMUSG00000084773ENSMUST00000143869ENSMUSG00000087089ENSMUST00000146372
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008GW_0001ENSG00000164330ENST00000313708ENST00000380654ENST00000517373ENST00000518836ENST00000519739ENST00000523315ENST00000622875ENSG00000253456ENST00000518425ENSG00000253811ENST00000522582ENSG00000254135ENST00000519609ENST00000522704ENSG00000254350ENST00000517595ENSG00000272085ENST00000607514CIL_0008GW_0002ENSMUSG00000057098ENSMUST00000081265ENSMUST00000101326ENSMUST00000109268ENSMUST00000138452ENSMUST00000149997ENSMUSG00000080981ENSMUST00000121454ENSMUSG00000084773ENSMUST00000143869ENSMUSG00000087089ENSMUST00000146372
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164330 ENST00000313708 8.491±0.00 2.671±0.00 0.688±0.00 0.313±0.00 6.538±5.32 1.428±0.39 0.995±0.12 0.904±0.00 4.180±0.00 1.312±0.00 0.284±0.00 1.432±0.62 0.983±0.75 2.978±0.00
ENST00000380654 N/A N/A N/A 0.422±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.224±0.00 1.132±0.00
ENST00000517373 N/A N/A 2.872±0.00 N/A 4.170±0.00 3.898±0.00 2.663±0.00 0.618±0.00 5.331±0.00 3.658±0.00 1.370±0.00 4.513±0.00 N/A N/A
ENST00000518323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518836 N/A 1.811±0.00 N/A 0.183±0.00 7.924±6.48 1.209±0.00 0.743±0.00 N/A N/A 1.160±0.00 0.598±0.00 0.784±0.60 1.638±0.00 4.925±0.00
ENST00000519739 N/A N/A N/A 0.423±0.00 N/A N/A N/A N/A N/A 0.678±0.00 N/A N/A N/A N/A
ENST00000519890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523315 N/A N/A 28.567±0.00 1.490±0.00 22.522±0.00 26.152±0.00 5.740±0.00 1.386±0.00 47.761±0.00 18.903±0.00 21.766±0.00 13.329±0.00 N/A N/A
ENST00000523464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622875 N/A 2.559±0.00 N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A 0.717±0.00 N/A N/A 1.811±0.00
ENSG00000253456 ENST00000518425 0.069±0.00 0.168±0.00 N/A N/A 0.168±0.00 2.077±0.00 0.044±0.00 0.094±0.00 N/A N/A 2.134±0.00 0.915±0.88 N/A 0.055±0.00
ENSG00000253811 ENST00000522582 0.021±0.00 0.083±0.00 N/A 0.103±0.00 0.246±0.00 N/A 0.113±0.00 N/A N/A 1.533±0.00 0.048±0.03 0.058±0.00 0.029±0.00 0.093±0.00
ENSG00000254135 ENST00000519609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.130±0.00
ENST00000522704 0.271±0.00 N/A N/A N/A 0.329±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.419±0.14
ENSG00000254350 ENST00000517595 0.067±0.00 N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00
ENSG00000272085 ENST00000607514 0.075±0.00 N/A N/A N/A 0.315±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000057098 ENSMUST00000081265 9.710±2.96 2.109±0.80 0.953±0.08 3.183±2.77 7.751±1.46 0.722±0.15 1.652±0.60 1.497±0.34 0.332±0.46 2.335±0.30 0.683±0.19 1.507±0.63 0.279±0.21 0.174±0.11
ENSMUST00000101326 16.550±4.91 8.106±0.82 N/A 5.137±0.45 21.239±6.47 1.390±0.56 2.470±0.77 3.046±1.17 0.242±0.24 4.999±1.54 0.386±0.00 5.193±2.25 0.141±0.08 0.459±0.09
ENSMUST00000109268 14.154±7.60 2.595±1.16 1.291±0.07 3.371±0.00 12.875±4.38 1.491±0.73 2.465±0.55 2.340±0.94 0.090±0.03 1.343±0.11 0.384±0.05 3.173±1.90 N/A 0.188±0.00
ENSMUST00000135993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138452 N/A N/A N/A 8.183±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149997 N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.17 N/A N/A N/A N/A N/A
ENSMUSG00000080981 ENSMUST00000121454 0.701±0.37 0.659±0.26 0.300±0.24 0.467±0.14 0.751±0.62 1.087±0.51 0.495±0.14 0.744±0.43 0.501±0.30 0.357±0.10 0.123±0.00 2.576±1.50 0.195±0.17 0.277±0.13
ENSMUSG00000084773 ENSMUST00000143869 0.031±0.01 N/A 0.023±0.00 N/A 0.191±0.09 0.057±0.00 N/A 0.044±0.02 0.019±0.01 0.042±0.01 0.053±0.03 0.064±0.06 0.011±0.00 0.071±0.02
ENSMUSG00000087089 ENSMUST00000146372 N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A 0.189±0.11 N/A N/A N/A N/A N/A

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