C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313708 EBF1-001 ENSG00000164330 9606 - 5:158695920-159099761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313708 8.491±0.00 2.671±0.00 0.688±0.00 0.313±0.00 6.538±5.32 1.428±0.39 0.995±0.12 0.904±0.00 4.180±0.00 1.312±0.00 0.284±0.00 1.432±0.62 0.983±0.75 2.978±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N2 CIL_0007N2_0001 UCNEbase 5:157771686-159082579
CIL_00016F CIL_00016F_0002 CGP 5:157785743-159099761
CIL_00080A CIL_00080A_0001 VISTA 5:158290760-158892059
CIL_0008GW CIL_0008GW_0001 VISTA 5:158416416-159017717
CIL_0008FV CIL_0008FV_0001 VISTA 5:158500688-159102492
CIL_0007UN CIL_0007UN_0001 VISTA 5:158613954-159215603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity
GO:0070742 IEA C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081265 Ebf1-001 protein_coding Mus_musculus 0 3718
ENSMUST00000101326 Ebf1-002 protein_coding Mus_musculus 0 3703
ENSMUST00000109268 Ebf1-003 protein_coding Mus_musculus 0 3062
ENSMUST00000149997 Ebf1-005 processed_transcript Mus_musculus 0 998
ENSMUST00000135993 Ebf1-006 processed_transcript Mus_musculus 0 586
ENSMUST00000138452 Ebf1-007 processed_transcript Mus_musculus 0 307

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