C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B-cell factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517373 EBF1-006 ENSG00000164330 9606 - 5:158698689-159099761 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000517373
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000517373 2.872±0.00 4.170±0.00 3.898±0.00 2.663±0.00 0.618±0.00 5.331±0.00 3.658±0.00 1.370±0.00 4.513±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N2 CIL_0007N2_0001 UCNEbase 5:157771686-159082579
CIL_00016F CIL_00016F_0002 CGP 5:157785743-159099761
CIL_00080A CIL_00080A_0001 VISTA 5:158290760-158892059
CIL_0008GW CIL_0008GW_0001 VISTA 5:158416416-159017717
CIL_0008FV CIL_0008FV_0001 VISTA 5:158500688-159102492
CIL_0007UN CIL_0007UN_0001 VISTA 5:158613954-159215603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109268 Ebf1-003 protein_coding Mus_musculus 0 2204
ENSMUST00000081265 Ebf1-001 protein_coding Mus_musculus 0 2106
ENSMUST00000101326 Ebf1-002 protein_coding Mus_musculus 0 2076
ENSMUST00000149997 Ebf1-005 processed_transcript Mus_musculus 0 998
ENSMUST00000135993 Ebf1-006 processed_transcript Mus_musculus 0 586
ENSMUST00000138452 Ebf1-007 processed_transcript Mus_musculus 0 307

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