C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytochrome c oxidase subunit VIc
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164919 COX6C 9606 - 8:99873200-99894062 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297564 COX6C-003 99878148-99893684 protein_coding
  ENST00000517682 COX6C-005 99878149-99893681 protein_coding
  ENST00000518171 COX6C-002 99885992-99893697 protein_coding
  ENST00000520271 COX6C-007 99878149-99893622 protein_coding
  ENST00000520468 COX6C-001 99877866-99894062 protein_coding
  ENST00000520517 COX6C-009 99874996-99893707 nonsense_mediated_decay
  ENST00000522934 COX6C-010 99873200-99893706 nonsense_mediated_decay
  ENST00000522940 COX6C-006 99878151-99893623 protein_coding
  ENST00000523016 COX6C-004 99887061-99893680 protein_coding
  ENST00000524245 COX6C-008 99878150-99893135 protein_coding
  ENST00000606245 COX6C-011 99878149-99878794 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297564ENST00000517682ENST00000518171ENST00000520271ENST00000520517ENST00000522934
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297564 N/A N/A N/A N/A N/A N/A 163.040±0.00 N/A 24.121±0.00 44.945±0.00 46.967±0.00 N/A N/A N/A
ENST00000517682 29.336±0.00 55.493±0.00 29.183±0.00 193.626±36.26 60.370±11.41 152.409±52.28 153.811±60.63 133.157±23.37 78.454±23.11 53.482±30.51 157.465±124.84 147.813±89.09 123.296±16.91 68.323±29.57
ENST00000518171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 176.703±0.00 95.168±0.00 85.282±0.00
ENST00000520271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 65.820±0.00 N/A N/A
ENST00000520517 21.416±0.00 N/A 15.497±0.00 57.090±0.00 22.059±0.00 N/A N/A N/A N/A 48.509±0.00 N/A 33.985±0.00 N/A 17.963±0.00
ENST00000522934 N/A 46.758±0.00 N/A 235.993±0.00 41.986±0.00 52.697±0.00 72.214±32.25 55.841±0.00 31.213±17.80 N/A 50.259±40.54 76.657±6.12 16.402±0.00 36.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026G CIL_00026G_0001 CGP 8:98944403-99877580
CIL_0006JN CIL_0006JN_0001 CGP 8:99013266-99894062
CIL_0008YK CIL_0008YK_0001 VISTA 8:99368181-99969581
CIL_0006JM CIL_0006JM_0001 CGP 8:99873200-100131268

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004129 IEA cytochrome-c oxidase activity
GO:0005739 IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0006091 TAS generation of precursor metabolites and energy
GO:0016021 IEA integral component of membrane
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038577 cox6c cytochrome c oxidase subunit VIc protein_coding Danio_rerio
ENSMUSG00000014313 Cox6c cytochrome c oxidase subunit VIc protein_coding Mus_musculus

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