C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FRAS1 related extracellular matrix 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000164946 FREM1 9606 - 9:14734666-14910995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380875 FREM1-005 14737200-14910995 nonsense_mediated_decay
  ENST00000380880 FREM1-001 14737396-14910430 protein_coding
  ENST00000380894 FREM1-002 14737152-14779533 protein_coding
  ENST00000422223 FREM1-201 14734666-14910995 protein_coding
  ENST00000427623 FREM1-006 14737366-14774161 nonsense_mediated_decay
  ENST00000466679 FREM1-007 14775935-14792801 processed_transcript
  ENST00000485068 FREM1-009 14775823-14784634 processed_transcript
  ENST00000486223 FREM1-010 14751705-14775905 processed_transcript
  ENST00000497634 FREM1-004 14784272-14792884 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380875ENST00000380880ENST00000380894ENST00000422223ENST00000427623ENST00000466679
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380875 N/A N/A N/A N/A N/A N/A N/A 0.296±0.00 0.008±0.00 0.223±0.00 0.337±0.23 N/A 0.155±0.05 N/A
ENST00000380880 0.107±0.00 0.135±0.00 0.696±0.00 0.115±0.00 1.492±0.87 0.413±0.00 0.187±0.05 1.694±0.00 N/A N/A N/A 0.249±0.11 0.384±0.12 0.610±0.00
ENST00000380894 N/A N/A N/A 0.319±0.00 1.715±0.00 N/A 0.264±0.03 2.378±0.00 N/A 1.030±0.00 0.434±0.00 0.952±0.45 0.736±0.71 2.035±0.94
ENST00000422223 N/A N/A 0.810±0.00 N/A 0.323±0.00 N/A 0.099±0.00 N/A 0.357±0.00 0.073±0.00 N/A N/A 0.136±0.00 0.171±0.00
ENST00000427623 0.182±0.00 N/A N/A N/A N/A N/A 0.361±0.00 N/A 0.059±0.00 N/A N/A N/A N/A 1.102±0.00
ENST00000466679 N/A N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 1.608±0.00 N/A N/A 0.521±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0001 VISTA 9:14449160-15052146
CIL_000149 CIL_000149_0001 CGP 9:14719724-14910995
CIL_00014A CIL_00014A_0001 CGP 9:14734666-15307360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005604 IEA basement membrane
GO:0007154 IEA cell communication
GO:0007160 IEA cell-matrix adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0097094 IMP craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069473 frem1a Fras1 related extracellular matrix 1a protein_coding Danio_rerio
ENSMUSG00000059049 Frem1 Fras1 related extracellular matrix protein 1 protein_coding Mus_musculus

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