C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FRAS1 related extracellular matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380875 FREM1-005 ENSG00000164946 9606 - 9:14737200-14910995 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungMusclePlacentaENST00000380875
Transcript ID Kidney Liver Lung Muscle Placenta
ENST00000380875 0.296±0.00 0.008±0.00 0.223±0.00 0.337±0.23 0.155±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0001 VISTA 9:14449160-15052146
CIL_000149 CIL_000149_0001 CGP 9:14719724-14910995
CIL_00014A CIL_00014A_0001 CGP 9:14734666-15307360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107230 Frem1-001 protein_coding Mus_musculus 0 3443
ENSMUST00000170248 Frem1-202 protein_coding Mus_musculus 0 3434
ENSMUST00000071708 Frem1-201 protein_coding Mus_musculus 0 2143
ENSMUST00000131102 Frem1-003 processed_transcript Mus_musculus 0 2091
ENSMUST00000130889 Frem1-005 retained_intron Mus_musculus 0 255

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