C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fras1 related extracellular matrix protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000059049 Frem1 10090 - 4:82897920-83052339 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071708 Frem1-201 82897927-83021102 protein_coding
  ENSMUST00000107230 Frem1-001 82897927-83052339 protein_coding
  ENSMUST00000127886 Frem1-002 82938426-82970703 protein_coding
  ENSMUST00000130889 Frem1-005 82915633-82924792 retained_intron
  ENSMUST00000131102 Frem1-003 82992935-83052339 processed_transcript
  ENSMUST00000133610 Frem1-006 82900564-82914434 processed_transcript
  ENSMUST00000141841 Frem1-004 82936109-82940882 retained_intron
  ENSMUST00000170248 Frem1-202 82897920-83052167 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000071708ENSMUST00000107230ENSMUST00000127886ENSMUST00000131102ENSMUST00000133610ENSMUST00000141841ENSMUST00000170248
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000071708 0.073±0.00 0.081±0.05 0.250±0.00 0.302±0.06 N/A 0.095±0.01 0.039±0.00 N/A 0.034±0.02 0.288±0.00 0.033±0.02 1.195±0.09 0.212±0.11
ENSMUST00000107230 0.157±0.00 N/A N/A 0.513±0.01 0.928±0.00 0.227±0.00 N/A 0.550±0.00 0.237±0.17 0.582±0.00 N/A 1.584±1.01 0.448±0.35
ENSMUST00000127886 N/A 0.085±0.04 N/A N/A N/A 0.149±0.10 0.028±0.01 N/A N/A N/A N/A 1.765±0.14 N/A
ENSMUST00000131102 0.014±0.00 N/A N/A N/A N/A 0.162±0.00 N/A N/A 0.026±0.00 N/A 0.033±0.00 N/A N/A
ENSMUST00000133610 N/A 0.385±0.00 N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A
ENSMUST00000141841 N/A 0.210±0.10 N/A N/A N/A N/A N/A N/A 0.165±0.06 N/A N/A N/A N/A
ENSMUST00000170248 0.153±0.11 0.117±0.02 0.597±0.03 0.637±0.00 1.484±0.68 0.188±0.00 N/A 1.054±0.12 0.135±0.05 0.586±0.09 0.032±0.00 2.302±0.99 0.438±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0002 VISTA 4:82615373-83218271
CIL_000149 CIL_000149_0002 CGP 4:82881751-83052339
CIL_00014A CIL_00014A_0002 CGP 4:82897920-83324255

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005604 IDA basement membrane
GO:0007154 IEA cell communication
GO:0007160 IMP cell-matrix adhesion
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0097094 ISS craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069473 frem1a Fras1 related extracellular matrix 1a protein_coding Danio_rerio
ENSG00000164946 FREM1 FRAS1 related extracellular matrix 1 protein_coding Homo_sapiens

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