C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FRAS1 related extracellular matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380894 FREM1-002 ENSG00000164946 9606 - 9:14737152-14779533 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000380894
Transcript ID Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000380894 0.319±0.00 1.715±0.00 0.264±0.03 2.378±0.00 1.030±0.00 0.434±0.00 0.952±0.45 0.736±0.71 2.035±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0001 VISTA 9:14449160-15052146
CIL_000149 CIL_000149_0001 CGP 9:14719724-14910995
CIL_00014A CIL_00014A_0001 CGP 9:14734666-15307360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007154 IEA cell communication
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0097094 IMP craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170248 Frem1-202 protein_coding Mus_musculus 0 1773
ENSMUST00000071708 Frem1-201 protein_coding Mus_musculus 0 1773
ENSMUST00000107230 Frem1-001 protein_coding Mus_musculus 0 1773
ENSMUST00000141841 Frem1-004 retained_intron Mus_musculus 0 401
ENSMUST00000130889 Frem1-005 retained_intron Mus_musculus 0 374
ENSMUST00000127886 Frem1-002 protein_coding Mus_musculus 0 344

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