C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FRAS1 related extracellular matrix 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422223 FREM1-201 ENSG00000164946 9606 - 9:14734666-14910995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLiverLungPlacentaTestisENST00000422223
Transcript ID Bladder Breast Heart Liver Lung Placenta Testis
ENST00000422223 0.810±0.00 0.323±0.00 0.099±0.00 0.357±0.00 0.073±0.00 0.136±0.00 0.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000943 CIL_000943_0001 VISTA 9:14449160-15052146
CIL_000149 CIL_000149_0001 CGP 9:14719724-14910995
CIL_00014A CIL_00014A_0001 CGP 9:14734666-15307360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005604 IEA basement membrane
GO:0007154 IEA cell communication
GO:0007160 IEA cell-matrix adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0097094 IMP craniofacial suture morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107230 Frem1-001 protein_coding Mus_musculus 0 5609
ENSMUST00000170248 Frem1-202 protein_coding Mus_musculus 0 5600
ENSMUST00000071708 Frem1-201 protein_coding Mus_musculus 0 3422
ENSMUST00000131102 Frem1-003 processed_transcript Mus_musculus 0 2091
ENSMUST00000130889 Frem1-005 retained_intron Mus_musculus 0 374

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