C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478027 RPSA-003 ENSG00000168028 9606 + 3:39408537-39412438 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000478027
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000478027 67.747±0.00 251.082±0.00 32.423±0.00 75.882±0.00 60.265±0.00 35.806±0.00 17.624±0.00 66.506±0.00 293.607±87.26 230.496±48.88 67.804±26.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000146 CIL_000146_0001 CGP 3:39383348-39412542
CIL_00013R CIL_00013R_0001 CGP 3:39406689-39529479

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 935
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 918
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 789
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 730
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 621
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 542
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 468

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