C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458478 RPSA-008 ENSG00000168028 9606 + 3:39406733-39412059 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000458478
Transcript ID Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000458478 30.261±0.00 71.872±0.00 51.816±0.00 45.963±0.00 90.039±0.00 25.021±0.00 252.506±116.42 191.589±49.75 52.935±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000146 CIL_000146_0001 CGP 3:39383348-39412542
CIL_00013R CIL_00013R_0001 CGP 3:39406689-39529479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1053
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1048
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 983
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 974
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 917
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 907
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 902
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 902
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 891
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 739
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 671
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 664
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 645

Loading