Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	ribosomal protein SA
ENST00000458478	RPSA-008	ENSG00000168028	9606	+	3:39406733-39412059	protein_coding

Expression Patterns

Transcript ID	Brain	Colon	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000458478	30.261±0.00	71.872±0.00	51.816±0.00	45.963±0.00	90.039±0.00	25.021±0.00	252.506±116.42	191.589±49.75	52.935±2.35

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_000146	CIL_000146_0001	CGP	3:39383348-39412542
CIL_00013R	CIL_00013R_0001	CGP	3:39406689-39529479

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003735	IEA	structural constituent of ribosome
GO:0005622	IEA	intracellular
GO:0005840	IEA	ribosome
GO:0006412	IEA	translation
GO:0015935	IEA	small ribosomal subunit

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000057740	Rpsa-ps10-201	protein_coding	Mus_musculus	0	1053
ENSMUST00000035105	Rpsa-201	protein_coding	Mus_musculus	0	1048
ENSMUST00000120702	Rpsa-ps9-001	processed_pseudogene	Mus_musculus	0	983
ENSMUST00000121691	Rpsa-ps4-001	processed_pseudogene	Mus_musculus	0	974
ENSMUST00000120596	Rpsa-ps12-001	processed_pseudogene	Mus_musculus	0	917
ENSMUST00000120423	Gm9083-001	processed_pseudogene	Mus_musculus	0	907
ENSMUST00000191040	Rpsa-ps1-001	processed_pseudogene	Mus_musculus	0	902
ENSMUST00000118446	Rpsa-ps11-001	processed_pseudogene	Mus_musculus	0	902
ENSMUST00000120191	Gm11824-001	processed_pseudogene	Mus_musculus	0	891
ENSMUST00000118817	Gm5764-001	processed_pseudogene	Mus_musculus	0	739
ENSMUST00000186198	RP23-2I19.1-001	processed_pseudogene	Mus_musculus	0	671
ENSDART00000135945	rpsa-001	protein_coding	Danio_rerio	0	664
ENSMUST00000059546	Rpsa-ps2-201	processed_pseudogene	Mus_musculus	0	645

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