C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443003 RPSA-002 ENSG00000168028 9606 + 3:39406735-39412434 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000443003
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000443003 61.953±0.00 126.569±0.00 16.396±0.00 51.472±0.00 147.562±0.00 16.680±0.00 69.921±0.00 49.618±0.00 49.561±0.00 27.339±0.00 81.803±51.98 64.656±0.00 85.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000146 CIL_000146_0001 CGP 3:39383348-39412542
CIL_00013R CIL_00013R_0001 CGP 3:39406689-39529479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA:IEA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005886 IDA plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IBA:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007155 IEA cell adhesion
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0030686 IBA 90S preribosome
GO:0043022 IPI ribosome binding
GO:0043236 IEA laminin binding
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1134
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1123
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 992
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 952
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 928
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 928
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 920
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 739
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 688
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 601
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 586

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