C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type IX, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169432 SCN9A 9606 - 2:166195185-166375993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303354 SCN9A-201 166195194-166375987 protein_coding
  ENST00000409435 SCN9A-004 166198672-166311756 protein_coding
  ENST00000409672 SCN9A-001 166195185-166375993 protein_coding
  ENST00000452182 SCN9A-003 166281760-166306571 protein_coding
  ENST00000454569 SCN9A-002 166281760-166306571 protein_coding
  ENST00000472119 SCN9A-006 166302619-166305920 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303354ENST00000409435ENST00000409672ENST00000454569
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 0.179±0.07 N/A
ENST00000409435 N/A N/A 0.133±0.00 0.351±0.00 1.358±0.00 N/A 1.619±0.00 0.509±0.00 0.083±0.00 N/A 0.240±0.00 N/A 1.428±0.00
ENST00000409672 0.242±0.00 0.374±0.00 N/A 0.175±0.00 1.278±0.30 0.146±0.07 0.814±0.40 0.454±0.21 0.630±0.00 0.062±0.02 0.090±0.07 0.566±0.40 0.488±0.18
ENST00000454569 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CK CIL_0006CK_0001 CGP 2:165989160-166375993
CIL_0006CV CIL_0006CV_0001 CGP 2:166195185-166494247

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA:IBA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 TAS:IEA sodium ion transport
GO:0006954 IEA inflammatory response
GO:0009636 IEA response to toxic substance
GO:0009791 IEA post-embryonic development
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0031402 IEA sodium ion binding
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA:IBA sodium ion transmembrane transport
GO:0048266 IEA behavioral response to pain
GO:0055085 IEA transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010783 scn1a sodium channel, voltage-gated, type I, alpha protein_coding Danio_rerio
ENSDARG00000062744 scn1lab sodium channel, voltage-gated, type I like, alpha b protein_coding Danio_rerio
ENSMUSG00000075316 Scn9a sodium channel, voltage-gated, type IX, alpha protein_coding Mus_musculus

Loading