C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type IX, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000075316 Scn9a 10090 - 2:66480080-66634962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100063 Scn9a-201 66480080-66634952 protein_coding
  ENSMUST00000100064 Scn9a-001 66480080-66634952 protein_coding
  ENSMUST00000112354 Scn9a-002 66483117-66634653 protein_coding
  ENSMUST00000141603 Scn9a-003 66564634-66634962 retained_intron
  ENSMUST00000151234 Scn9a-004 66540015-66543175 retained_intron
  ENSMUST00000164384 Scn9a-202 66482091-66634653 protein_coding
  ENSMUST00000169900 Scn9a-203 66482091-66634653 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100063 0.076±0.00 0.038±0.00 N/A N/A 0.045±0.00 N/A 0.020±0.01 0.005±0.01 N/A N/A 0.022±0.01 0.005±0.00 N/A
ENSMUST00000100064 N/A 0.016±0.00 1.154±0.96 N/A N/A 0.020±0.00 0.046±0.00 0.001±0.00 N/A N/A 0.021±0.01 0.199±0.19 N/A
ENSMUST00000112354 0.042±0.02 N/A N/A 0.007±0.00 0.059±0.00 0.021±0.00 0.015±0.00 0.002±0.00 0.022±0.00 N/A 0.040±0.01 0.006±0.00 0.006±0.00
ENSMUST00000141603 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000151234 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164384 N/A N/A N/A N/A 0.110±0.02 0.022±0.00 0.040±0.00 0.001±0.00 0.003±0.00 N/A 0.012±0.00 N/A N/A
ENSMUST00000169900 N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 0.003±0.00 N/A 0.009±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962
CIL_0006CV CIL_0006CV_0002 CGP 2:66480080-66784914

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IBA voltage-gated sodium channel activity
GO:0005886 IBA plasma membrane
GO:0006954 IMP inflammatory response
GO:0009636 IDA response to toxic substance
GO:0009791 IMP post-embryonic development
GO:0019228 IBA neuronal action potential
GO:0031402 IEA sodium ion binding
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IBA sodium ion transmembrane transport
GO:0048266 IMP behavioral response to pain
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010783 scn1a sodium channel, voltage-gated, type I, alpha protein_coding Danio_rerio
ENSDARG00000062744 scn1lab sodium channel, voltage-gated, type I like, alpha b protein_coding Danio_rerio
ENSG00000169432 SCN9A sodium channel, voltage-gated, type IX, alpha subunit protein_coding Homo_sapiens

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