C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144285-ENSG00000169432 CGP 9606 2:165989160-166375993
GeneTranscriptPositionBiotype
ENSG00000144285 (SCN1A)
sodium channel, voltage-gated, type I, alpha subunit 		ENST00000303395 (SCN1A-001) 165989163-166073621 protein_coding
ENST00000375405 (SCN1A-002) 165989163-166073639 protein_coding
ENST00000409050 (SCN1A-003) 165991245-166073621 protein_coding
ENST00000423058 (SCN1A-201) 165989160-166073697 protein_coding
ENST00000473295 (SCN1A-005) 165996053-166000063 retained_intron
ENST00000491429 (SCN1A-004) 165998125-166002908 retained_intron
ENST00000507401 (SCN1A-007) 166073302-166128013 retained_intron
ENSG00000169432 (SCN9A)
sodium channel, voltage-gated, type IX, alpha subunit 		ENST00000303354 (SCN9A-201) 166195194-166375987 protein_coding
ENST00000409435 (SCN9A-004) 166198672-166311756 protein_coding
ENST00000409672 (SCN9A-001) 166195185-166375993 protein_coding
ENST00000452182 (SCN9A-003) 166281760-166306571 protein_coding
ENST00000454569 (SCN9A-002) 166281760-166306571 protein_coding
ENST00000472119 (SCN9A-006) 166302619-166305920 retained_intron
ENSG00000236107 (AC010127.3)
 ENST00000447809 (AC010127.3-001) 166081531-166301784 antisense
ENST00000595268 (AC010127.3-004) 166015680-166060458 antisense
ENST00000595647 (AC010127.3-003) 165957399-166171547 antisense
ENST00000597623 (AC010127.3-002) 165957430-166036385 antisense
ENST00000599041 (AC010127.3-005) 166036065-166171474 antisense
CIL_0006CK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000064329-ENSMUSG00000075316 CGP 10090 2:66270781-66634962
GeneTranscriptPositionBiotype
ENSMUSG00000064329 (Scn1a)
sodium channel, voltage-gated, type I, alpha 		ENSMUST00000077489 (Scn1a-004) 66270784-66351195 protein_coding
ENSMUST00000094951 (Scn1a-005) 66272884-66351177 protein_coding
ENSMUST00000112366 (Scn1a-001) 66270781-66410064 protein_coding
ENSMUST00000112371 (Scn1a-201) 66270782-66440837 protein_coding
ENSMUST00000129508 (Scn1a-002) 66348364-66440814 processed_transcript
ENSMUST00000138910 (Scn1a-006) 66335443-66440840 protein_coding
ENSMUST00000156865 (Scn1a-003) 66272892-66318139 processed_transcript
ENSMUSG00000075316 (Scn9a)
sodium channel, voltage-gated, type IX, alpha 		ENSMUST00000100063 (Scn9a-201) 66480080-66634952 protein_coding
ENSMUST00000100064 (Scn9a-001) 66480080-66634952 protein_coding
ENSMUST00000112354 (Scn9a-002) 66483117-66634653 protein_coding
ENSMUST00000141603 (Scn9a-003) 66564634-66634962 retained_intron
ENSMUST00000151234 (Scn9a-004) 66540015-66543175 retained_intron
ENSMUST00000164384 (Scn9a-202) 66482091-66634653 protein_coding
ENSMUST00000169900 (Scn9a-203) 66482091-66634653 protein_coding
ENSMUSG00000081307 (Gm13627)
predicted gene 13627 		ENSMUST00000119700 (Gm13627-001) 66529414-66530746 processed_pseudogene
ENSMUSG00000085386 (Gm13630)
predicted gene 13630 		ENSMUST00000127849 (Gm13630-001) 66409494-66421588 processed_transcript
ENSMUSG00000087301 (Gm13629)
predicted gene 13629 		ENSMUST00000141149 (Gm13629-001) 66440880-66546026 antisense
ENSMUST00000152740 (Gm13629-002) 66440896-66511249 antisense
ENSMUSG00000088994 (Gm23046)
predicted gene, 23046 		ENSMUST00000158369 (Gm23046-201) 66602515-66602798 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CK_0001ENSG00000144285ENST00000303395ENST00000375405ENST00000409050ENST00000423058ENST00000473295ENST00000491429ENST00000507401ENSG00000169432ENST00000303354ENST00000409435ENST00000409672ENST00000452182ENST00000454569ENST00000472119ENSG00000236107ENST00000447809ENST00000595268ENST00000595647ENST00000597623ENST00000599041CIL_0006CK_0002ENSMUSG00000064329ENSMUST00000077489ENSMUST00000094951ENSMUST00000112366ENSMUST00000112371ENSMUST00000129508ENSMUST00000138910ENSMUST00000156865ENSMUSG00000075316ENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900ENSMUSG00000081307ENSMUST00000119700ENSMUSG00000085386ENSMUST00000127849ENSMUSG00000087301ENSMUST00000141149ENSMUST00000152740ENSMUSG00000088994ENSMUST00000158369
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CK_0001ENSG00000144285ENST00000303395ENST00000375405ENST00000409050ENSG00000169432ENST00000303354ENST00000409435ENST00000409672ENST00000454569ENSG00000236107ENST00000447809CIL_0006CK_0002ENSMUSG00000064329ENSMUST00000077489ENSMUST00000094951ENSMUST00000112366ENSMUST00000112371ENSMUST00000138910ENSMUST00000156865ENSMUSG00000075316ENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900ENSMUSG00000081307ENSMUST00000119700ENSMUSG00000085386ENSMUST00000127849ENSMUSG00000087301ENSMUST00000141149ENSMUST00000152740ENSMUSG00000088994ENSMUST00000158369
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144285 ENST00000303395 N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000375405 N/A N/A N/A 6.001±0.63 N/A N/A 0.045±0.00 N/A N/A N/A N/A 0.252±0.00 N/A N/A
ENST00000409050 N/A N/A N/A 4.886±0.00 N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000423058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169432 ENST00000303354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 0.179±0.07 N/A
ENST00000409435 N/A N/A 0.133±0.00 N/A 0.351±0.00 1.358±0.00 N/A 1.619±0.00 0.509±0.00 0.083±0.00 N/A 0.240±0.00 N/A 1.428±0.00
ENST00000409672 0.242±0.00 0.374±0.00 N/A N/A 0.175±0.00 1.278±0.30 0.146±0.07 0.814±0.40 0.454±0.21 0.630±0.00 0.062±0.02 0.090±0.07 0.566±0.40 0.488±0.18
ENST00000452182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A N/A
ENST00000472119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236107 ENST00000447809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 0.076±0.00 N/A N/A
ENST00000595268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000064329 ENSMUST00000077489 0.033±0.03 N/A 0.070±0.00 2.704±0.00 0.014±0.00 N/A 0.008±0.00 0.012±0.01 0.004±0.00 0.026±0.00 0.010±0.01 0.027±0.01 0.006±0.00 0.116±0.04
ENSMUST00000094951 0.016±0.00 0.042±0.03 N/A N/A 0.014±0.00 N/A 0.022±0.01 N/A 0.007±0.01 N/A 0.014±0.00 0.079±0.05 N/A 0.055±0.01
ENSMUST00000112366 N/A N/A N/A 1.208±0.88 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112371 N/A N/A N/A 1.577±1.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138910 N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156865 0.016±0.00 N/A N/A 8.606±0.00 0.040±0.02 0.041±0.00 N/A 0.024±0.02 N/A 0.025±0.00 N/A 0.016±0.01 N/A 0.120±0.11
ENSMUSG00000075316 ENSMUST00000100063 N/A 0.076±0.00 0.038±0.00 N/A N/A 0.045±0.00 N/A 0.020±0.01 0.005±0.01 N/A N/A 0.022±0.01 0.005±0.00 N/A
ENSMUST00000100064 N/A N/A 0.016±0.00 1.154±0.96 N/A N/A 0.020±0.00 0.046±0.00 0.001±0.00 N/A N/A 0.021±0.01 0.199±0.19 N/A
ENSMUST00000112354 N/A 0.042±0.02 N/A N/A 0.007±0.00 0.059±0.00 0.021±0.00 0.015±0.00 0.002±0.00 0.022±0.00 N/A 0.040±0.01 0.006±0.00 0.006±0.00
ENSMUST00000141603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000151234 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164384 N/A N/A N/A N/A N/A 0.110±0.02 0.022±0.00 0.040±0.00 0.001±0.00 0.003±0.00 N/A 0.012±0.00 N/A N/A
ENSMUST00000169900 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 0.003±0.00 N/A 0.009±0.00 N/A N/A
ENSMUSG00000081307 ENSMUST00000119700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.08 N/A
ENSMUSG00000085386 ENSMUST00000127849 0.013±0.00 N/A 0.007±0.00 0.059±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 0.017±0.00
ENSMUSG00000087301 ENSMUST00000141149 N/A N/A N/A 6.143±0.00 N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A
ENSMUST00000152740 N/A N/A N/A 4.933±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088994 ENSMUST00000158369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A

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