C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457812 RAPH1-005 ENSG00000173166 9606 - 2:203394345-203535262 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JP CIL_0000JP_0002 CGP 2:203238449-203447723
CIL_0000JQ CIL_0000JQ_0002 CGP 2:203328219-203535410
CIL_0001QX CIL_0001QX_0001 CGP 2:203394345-203738912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140485 Raph1-001 protein_coding Mus_musculus 0 2401
ENSMUST00000027168 Raph1-201 protein_coding Mus_musculus 0 1441
ENSMUST00000090293 Raph1-003 protein_coding Mus_musculus 0 1439
ENSMUST00000142258 Raph1-004 protein_coding Mus_musculus 0 771
ENSMUST00000182085 Raph1-005 protein_coding Mus_musculus 0 715
ENSMUST00000188511 Raph1-002 retained_intron Mus_musculus 0 416
ENSMUST00000186097 Abi2-009 protein_coding Mus_musculus 0 268
ENSMUST00000187709 Abi2-007 protein_coding Mus_musculus 0 268
ENSMUST00000189980 Abi2-003 protein_coding Mus_musculus 0 268
ENSMUST00000188618 Abi2-002 protein_coding Mus_musculus 0 268
ENSMUST00000052332 Abi2-001 protein_coding Mus_musculus 0 268
ENSMUST00000189383 Raph1-006 retained_intron Mus_musculus 0 200

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