C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH2 domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360027 SH2D1A-006 ENSG00000183918 9606 + X:124346525-124371488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungTestisENST00000360027
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Testis
ENST00000360027 0.066±0.00 2.354±0.00 1.290±0.00 0.056±0.00 0.126±0.00 0.195±0.00 2.115±0.00 0.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664
CIL_0000AW CIL_0000AW_0001 CGP X:124346344-124963817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 NAS:IEA SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0006968 NAS:IEA cellular defense response
GO:0007267 IDA:IEA cell-cell signaling
GO:0009967 IEA positive regulation of signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005839 Sh2d1a-001 protein_coding Mus_musculus 0 460
ENSMUST00000115070 Sh2d1a-002 protein_coding Mus_musculus 0 418
ENSMUST00000189753 Sh2d1a-006 protein_coding Mus_musculus 0 405
ENSMUST00000128393 Sh2d1a-005 processed_transcript Mus_musculus 0 320
ENSMUST00000129855 Sh2d1a-003 processed_transcript Mus_musculus 0 320

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