C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH2 domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371139 SH2D1A-002 ENSG00000183918 9606 + X:124346344-124373155 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000371139
Transcript ID Adrenal Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000371139 0.639±0.00 0.062±0.00 0.053±0.03 0.021±0.00 0.134±0.00 1.043±0.30 0.035±0.00 0.118±0.01 0.086±0.01 0.175±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664
CIL_0000AW CIL_0000AW_0001 CGP X:124346344-124963817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 NAS:IEA SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA:IEA cytoplasm
GO:0006959 IEA humoral immune response
GO:0006968 NAS:IEA cellular defense response
GO:0007267 IDA:IEA cell-cell signaling
GO:0009967 IEA positive regulation of signal transduction
GO:0045954 IEA positive regulation of natural killer cell mediated cytotoxicity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005839 Sh2d1a-001 protein_coding Mus_musculus 0 571
ENSMUST00000115070 Sh2d1a-002 protein_coding Mus_musculus 0 529
ENSMUST00000189753 Sh2d1a-006 protein_coding Mus_musculus 0 431
ENSMUST00000129855 Sh2d1a-003 processed_transcript Mus_musculus 0 431
ENSMUST00000128393 Sh2d1a-005 processed_transcript Mus_musculus 0 375

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