C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2F (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409332 UBE2F-004 ENSG00000184182 9606 + 2:237967082-238041917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000409332
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000409332 7.909±0.00 9.114±0.00 6.210±0.00 7.541±0.00 7.043±0.00 6.182±0.00 3.651±1.38 4.343±2.54 14.055±0.00 9.780±2.39 14.405±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NH CIL_0003NH_0001 CGP 2:237858893-238042782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0016881 IEA acid-amino acid ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178627 Ube2f-201 protein_coding Mus_musculus 0 985
ENSMUST00000171112 Ube2f-004 protein_coding Mus_musculus 0 985
ENSMUST00000171165 Ube2f-002 protein_coding Mus_musculus 0 985
ENSMUST00000191368 Ube2f-003 protein_coding Mus_musculus 0 802
ENSMUST00000059743 Ube2f-001 protein_coding Mus_musculus 0 752
ENSMUST00000071825 Gm5434-201 protein_coding Mus_musculus 0 745
ENSMUST00000080066 Gm7099-201 pseudogene Mus_musculus 0 486
ENSMUST00000185950 Ube2f-009 retained_intron Mus_musculus 0 414
ENSMUST00000120831 Gm16016-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000187494 Ube2f-008 retained_intron Mus_musculus 0 213
ENSMUST00000189589 Ube2f-010 retained_intron Mus_musculus 0 195
ENSMUST00000191533 Ube2f-006 protein_coding Mus_musculus 1.4013e-45 187
ENSMUST00000188576 Ube2f-007 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000181346 Gm26864-001 processed_pseudogene Mus_musculus 2e-26 124
ENSMUST00000185697 Ube2f-005 retained_intron Mus_musculus 3e-23 113

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